KEGG   PATHWAY: tng00020
Entry
tng00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Tetraodon nigroviridis (spotted green pufferfish)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tng00020  Citrate cycle (TCA cycle)
tng00020

Module
tng_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:tng00020]
tng_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:tng00020]
tng_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tng00020]
Other DBs
GO: 0006099
Organism
Tetraodon nigroviridis (spotted green pufferfish) [GN:tng]
Gene
GSTEN00023547G001  unnamed protein product [KO:K01647] [EC:2.3.3.1]
GSTEN00001155G001  unnamed protein product [KO:K01648] [EC:2.3.3.8]
GSTEN00013067G001  unnamed protein product [KO:K01648] [EC:2.3.3.8]
GSTEN00012625G001  unnamed protein product [KO:K01648] [EC:2.3.3.8]
GSTEN00012926G001  unnamed protein product [KO:K01648] [EC:2.3.3.8]
GSTEN00012949G001  unnamed protein product [KO:K01648] [EC:2.3.3.8]
GSTEN00009462G001  unnamed protein product [KO:K01681] [EC:4.2.1.3]
GSTEN00024238G001  unnamed protein product [KO:K01681] [EC:4.2.1.3]
GSTEN00021781G001  unnamed protein product [KO:K00031] [EC:1.1.1.42]
GSTEN00035635G001  unnamed protein product [KO:K00031] [EC:1.1.1.42]
GSTEN00021458G001  unnamed protein product [KO:K00031] [EC:1.1.1.42]
GSTEN00028116G001  unnamed protein product [KO:K00030] [EC:1.1.1.41]
GSTEN00015984G001  unnamed protein product [KO:K00030] [EC:1.1.1.41]
GSTEN00020960G001  unnamed protein product [KO:K00030] [EC:1.1.1.41]
GSTEN00025361G001  unnamed protein product [KO:K00164] [EC:1.2.4.2]
GSTEN00016462G001  unnamed protein product [KO:K00164] [EC:1.2.4.2]
GSTEN00010753G001  unnamed protein product [KO:K00164] [EC:1.2.4.2]
GSTEN00032331G001  unnamed protein product [KO:K00658] [EC:2.3.1.61]
GSTEN00032333G001  unnamed protein product [KO:K00658] [EC:2.3.1.61]
GSTEN00007788G001  unnamed protein product [KO:K00382] [EC:1.8.1.4]
GSTEN00003696G001  unnamed protein product [KO:K01899] [EC:6.2.1.4 6.2.1.5]
GSTEN00021008G001  unnamed protein product [KO:K01900] [EC:6.2.1.4 6.2.1.5]
GSTEN00035332G001  unnamed protein product [KO:K00234] [EC:1.3.5.1]
GSTEN00020587G001  unnamed protein product [KO:K00235] [EC:1.3.5.1]
GSTEN00027350G001  unnamed protein product [KO:K00235] [EC:1.3.5.1]
GSTEN00005575G001  unnamed protein product [KO:K00236]
GSTEN00028793G001  unnamed protein product [KO:K01679] [EC:4.2.1.2]
GSTEN00003840G001  unnamed protein product [KO:K00025] [EC:1.1.1.37]
GSTEN00018705G001  unnamed protein product [KO:K00025] [EC:1.1.1.37]
GSTEN00035367G001  unnamed protein product [KO:K00026] [EC:1.1.1.37]
GSTEN00024385G001  unnamed protein product [KO:K01958] [EC:6.4.1.1]
GSTEN00009627G001  unnamed protein product [KO:K01596] [EC:4.1.1.32]
GSTEN00032465G001  unnamed protein product [KO:K01596] [EC:4.1.1.32]
GSTEN00007919G001  unnamed protein product [KO:K00161] [EC:1.2.4.1]
GSTEN00019029G001  unnamed protein product [KO:K00161] [EC:1.2.4.1]
GSTEN00012875G001  unnamed protein product [KO:K00162] [EC:1.2.4.1]
GSTEN00018994G001  unnamed protein product [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tng00010  Glycolysis / Gluconeogenesis
tng00053  Ascorbate and aldarate metabolism
tng00061  Fatty acid biosynthesis
tng00062  Fatty acid elongation
tng00071  Fatty acid degradation
tng00190  Oxidative phosphorylation
tng00220  Arginine biosynthesis
tng00250  Alanine, aspartate and glutamate metabolism
tng00280  Valine, leucine and isoleucine degradation
tng00350  Tyrosine metabolism
tng00470  D-Amino acid metabolism
tng00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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