PATHWAY: tom01100 Help Entry tom01100          Global    Pathway                                 Name Metabolic pathways - Tateyamaria omphalii Class BRITE hierarchy Pathway map tom01100   Metabolic pathways Module tom_M00002   Glycolysis, core module involving three-carbon compounds [PATH:tom01100] tom_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:tom01100] tom_M00004   Pentose phosphate pathway (Pentose phosphate cycle) [PATH:tom01100] tom_M00005   PRPP biosynthesis, ribose-5P => PRPP [PATH:tom01100] tom_M00006   Pentose phosphate pathway, oxidative phase, glucose-6P => ribulose-5P [PATH:tom01100] tom_M00007   Pentose phosphate pathway, non-oxidative phase, fructose-6P => ribose-5P [PATH:tom01100] tom_M00008   Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:tom01100] tom_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:tom01100] tom_M00015   Proline biosynthesis, glutamate => proline [PATH:tom01100] tom_M00016   Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:tom01100] tom_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:tom01100] tom_M00020   Serine biosynthesis, glycerate-3P => serine [PATH:tom01100] tom_M00021   Cysteine biosynthesis, serine => cysteine [PATH:tom01100] tom_M00022   Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:tom01100] tom_M00023   Tryptophan biosynthesis, chorismate => tryptophan [PATH:tom01100] tom_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:tom01100] tom_M00046   Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:tom01100] tom_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:tom01100] tom_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:tom01100] tom_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:tom01100] tom_M00061   Glucuronate degradation, glucuronate => pyruvate + glyceraldehyde-3P [PATH:tom01100] tom_M00082   Fatty acid biosynthesis, initiation [PATH:tom01100] tom_M00083   Fatty acid biosynthesis, elongation [PATH:tom01100] tom_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:tom01100] tom_M00087   beta-Oxidation [PATH:tom01100] tom_M00096   C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:tom01100] tom_M00118   Glutathione biosynthesis, glutamate => glutathione [PATH:tom01100] tom_M00120   Coenzyme A biosynthesis, pantothenate => CoA [PATH:tom01100] tom_M00140   C1-unit interconversion, prokaryotes [PATH:tom01100] tom_M00144   NADH:quinone oxidoreductase, prokaryotes [PATH:tom01100] tom_M00149   Succinate dehydrogenase, prokaryotes [PATH:tom01100] tom_M00150   Fumarate reductase, prokaryotes [PATH:tom01100] tom_M00151   Cytochrome bc1 complex respiratory unit [PATH:tom01100] tom_M00155   Cytochrome c oxidase, prokaryotes [PATH:tom01100] tom_M00156   Cytochrome c oxidase, cbb3-type [PATH:tom01100] tom_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:tom01100] tom_M00169   CAM (Crassulacean acid metabolism), light [PATH:tom01100] tom_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tom01100] tom_M00364   C10-C20 isoprenoid biosynthesis, bacteria [PATH:tom01100] tom_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:tom01100] tom_M00531   Assimilatory nitrate reduction, nitrate => ammonia [PATH:tom01100] tom_M00549   UDP-Glc biosynthesis, Glc => UDP-Glc [PATH:tom01100] tom_M00552   Galactonate degradation, De Ley-Doudoroff pathway, galactonate => glycerate-3P [PATH:tom01100] tom_M00555   Betaine biosynthesis, choline => betaine [PATH:tom01100] tom_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:tom01100] tom_M00579   Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:tom01100] tom_M00741   Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:tom01100] tom_M00793   dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha [PATH:tom01100] tom_M00844   Arginine biosynthesis, ornithine => arginine [PATH:tom01100] tom_M00854   Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:tom01100] tom_M00880   Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:tom01100] tom_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:tom01100] tom_M00899   Thiamine salvage pathway, HMP/HET => TMP [PATH:tom01100] tom_M00909   UDP-GlcNAc biosynthesis, prokaryotes, Fru-6P => UDP-GlcNAc [PATH:tom01100] tom_M00958   Adenine ribonucleotide degradation, AMP => Urate [PATH:tom01100] tom_M00959   Guanine ribonucleotide degradation, GMP => Urate [PATH:tom01100] tom_M00995   UDP-MurNAc biosynthesis, Fru-6P => UDP-MurNAc [PATH:tom01100] tom_M00999   UDP-GlcA/GalA biosynthesis, UDP-Glc => UDP-GlcA => UDP-GalA [PATH:tom01100] tom_M01000   GDP-Man biosynthesis, Fru-6P => GDP-Man [PATH:tom01100] tom_M01039   Spirilloxanthin biosynthesis, bacteria, lycopene => spirilloxanthin [PATH:tom01100] tom_M01051   Sulfoquinovose degradation, sulfoquinovose => glucose [PATH:tom01100] Organism Tateyamaria omphalii [GN:tom] Related pathway tom00010   Glycolysis / Gluconeogenesis tom00020   Citrate cycle (TCA cycle) tom00030   Pentose phosphate pathway tom00040   Pentose and glucuronate interconversions tom00051   Fructose and mannose metabolism tom00052   Galactose metabolism tom00053   Ascorbate and aldarate metabolism tom00061   Fatty acid biosynthesis tom00071   Fatty acid degradation tom00074   Mycolic acid biosynthesis tom00100   Steroid biosynthesis tom00121   Secondary bile acid biosynthesis tom00130   Ubiquinone and other terpenoid-quinone biosynthesis tom00190   Oxidative phosphorylation tom00220   Arginine biosynthesis tom00230   Purine metabolism tom00240   Pyrimidine metabolism tom00250   Alanine, aspartate and glutamate metabolism tom00260   Glycine, serine and threonine metabolism tom00261   Monobactam biosynthesis tom00270   Cysteine and methionine metabolism tom00280   Valine, leucine and isoleucine degradation tom00290   Valine, leucine and isoleucine biosynthesis tom00300   Lysine biosynthesis tom00310   Lysine degradation tom00330   Arginine and proline metabolism tom00332   Carbapenem biosynthesis tom00340   Histidine metabolism tom00350   Tyrosine metabolism tom00360   Phenylalanine metabolism tom00361   Chlorocyclohexane and chlorobenzene degradation tom00362   Benzoate degradation tom00380   Tryptophan metabolism tom00400   Phenylalanine, tyrosine and tryptophan biosynthesis tom00401   Novobiocin biosynthesis tom00410   beta-Alanine metabolism tom00430   Taurine and hypotaurine metabolism tom00440   Phosphonate and phosphinate metabolism tom00450   Selenocompound metabolism tom00460   Cyanoamino acid metabolism tom00470   D-Amino acid metabolism tom00480   Glutathione metabolism tom00500   Starch and sucrose metabolism tom00520   Amino sugar and nucleotide sugar metabolism tom00521   Streptomycin biosynthesis tom00523   Polyketide sugar unit biosynthesis tom00525   Acarbose and validamycin biosynthesis tom00540   Lipopolysaccharide biosynthesis tom00541   Biosynthesis of various nucleotide sugars tom00543   Exopolysaccharide biosynthesis tom00550   Peptidoglycan biosynthesis tom00552   Teichoic acid biosynthesis tom00561   Glycerolipid metabolism tom00562   Inositol phosphate metabolism tom00564   Glycerophospholipid metabolism tom00566   Sulfoquinovose metabolism tom00592   alpha-Linolenic acid metabolism tom00600   Sphingolipid metabolism tom00620   Pyruvate metabolism tom00622   Xylene degradation tom00625   Chloroalkane and chloroalkene degradation tom00626   Naphthalene degradation tom00627   Aminobenzoate degradation tom00630   Glyoxylate and dicarboxylate metabolism tom00640   Propanoate metabolism tom00643   Styrene degradation tom00650   Butanoate metabolism tom00660   C5-Branched dibasic acid metabolism tom00670   One carbon pool by folate tom00680   Methane metabolism tom00710   Carbon fixation by Calvin cycle tom00720   Other carbon fixation pathways tom00730   Thiamine metabolism tom00740   Riboflavin metabolism tom00750   Vitamin B6 metabolism tom00760   Nicotinate and nicotinamide metabolism tom00770   Pantothenate and CoA biosynthesis tom00780   Biotin metabolism tom00785   Lipoic acid metabolism tom00790   Folate biosynthesis tom00860   Porphyrin metabolism tom00900   Terpenoid backbone biosynthesis tom00906   Carotenoid biosynthesis tom00907   Pinene, camphor and geraniol degradation tom00910   Nitrogen metabolism tom00920   Sulfur metabolism tom00930   Caprolactam degradation tom00946   Degradation of flavonoids tom00984   Steroid degradation tom00999   Biosynthesis of various plant secondary metabolites tom01040   Biosynthesis of unsaturated fatty acids KO pathway ko01100

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