KEGG   PATHWAY: toq00020
Entry
toq00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Tolypothrix sp. PCC 7910
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
toq00020  Citrate cycle (TCA cycle)
toq00020

Module
toq_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:toq00020]
toq_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:toq00020]
Other DBs
GO: 0006099
Organism
Tolypothrix sp. PCC 7910 [GN:toq]
Gene
HCG51_10030  citrate synthase [KO:K01647] [EC:2.3.3.1]
HCG51_30755  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
HCG51_20135  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HCG51_16135  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HCG51_33435  CoA-binding protein [KO:K01902] [EC:6.2.1.5]
HCG51_33440  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
HCG51_16460  succinate dehydrogenase/fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
HCG51_29035  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
HCG51_32465  heterodisulfide reductase [KO:K00241]
HCG51_18290  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HCG51_07140  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
HCG51_12080  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
HCG51_25465  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
HCG51_01360  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
HCG51_15960  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
toq00010  Glycolysis / Gluconeogenesis
toq00053  Ascorbate and aldarate metabolism
toq00061  Fatty acid biosynthesis
toq00071  Fatty acid degradation
toq00190  Oxidative phosphorylation
toq00220  Arginine biosynthesis
toq00250  Alanine, aspartate and glutamate metabolism
toq00280  Valine, leucine and isoleucine degradation
toq00350  Tyrosine metabolism
toq00470  D-Amino acid metabolism
toq00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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