KEGG   PATHWAY: umr04136
Entry
umr04136                    Pathway                                
Name
Autophagy - other - Ursus maritimus (polar bear)
Description
Autophagy is a degradative pathway for the removal of cytoplasmic materials in eukaryotic cells, and is characterized by the formation of a double-membrane structure called the autophagosome, either in a housekeeping capacity or during stress and senescence. The process of autophagy could be divided into several stages: induction, vesicle nucleation, elongation and closure, and fusion and digestion. Most essential autophagic machineries are conserved throughout eukaryotes (see map04140 for animals and map04138 for fungi). This map is for other eukaryotes including plants and protists, where autophagy related genes (ATGs) play similar roles in the life cycle. However, autophagy has been relatively less studied in lower eukaryotes.
Class
Cellular Processes; Transport and catabolism
Pathway map
umr04136  Autophagy - other
umr04136

Other DBs
GO: 0006914
Organism
Ursus maritimus (polar bear) [GN:umr]
Gene
103665983  RPTOR; regulatory-associated protein of mTOR [KO:K07204]
103666660  MTOR; serine/threonine-protein kinase mTOR [KO:K07203] [EC:2.7.11.1]
103668783  MLST8; target of rapamycin complex subunit LST8 isoform X1 [KO:K08266]
103658551  ULK2; serine/threonine-protein kinase ULK2 isoform X1 [KO:K08269] [EC:2.7.11.1]
103672325  ATG13; autophagy-related protein 13 [KO:K08331]
103675502  ATG101; autophagy-related protein 101 isoform X1 [KO:K19730]
103682603  IGBP1; immunoglobulin-binding protein 1 isoform X1 [KO:K17606]
103659105  PPP2CB; serine/threonine-protein phosphatase 2A catalytic subunit beta isoform [KO:K04382] [EC:3.1.3.16]
121100753  PPP2CA; serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform [KO:K04382] [EC:3.1.3.16]
103660995  ATG9B; LOW QUALITY PROTEIN: autophagy-related protein 9B [KO:K17907]
103662748  ATG9A; autophagy-related protein 9A isoform X3 [KO:K17907]
103673638  ATG2B; autophagy-related protein 2 homolog B isoform X1 [KO:K17906]
103679563  ATG2A; autophagy-related protein 2 homolog A isoform X1 [KO:K17906]
103665675  WIPI1; WD repeat domain phosphoinositide-interacting protein 1 isoform X1 [KO:K17908]
103670082  WIPI2; WD repeat domain phosphoinositide-interacting protein 2 isoform X1 [KO:K17908]
103668942  BECN2; beclin-2 [KO:K08334]
103672587  BECN1; beclin-1 isoform X2 [KO:K08334]
103663663  PIK3C3; phosphatidylinositol 3-kinase catalytic subunit type 3 [KO:K00914] [EC:2.7.1.137]
103679280  PIK3R4; phosphoinositide 3-kinase regulatory subunit 4 [KO:K08333] [EC:2.7.11.1]
103679953  ATG12; ubiquitin-like protein ATG12 isoform X1 [KO:K08336]
103675849  ATG5; autophagy protein 5 isoform X2 [KO:K08339]
103662661  ATG16L1; autophagy-related protein 16-1 isoform X1 [KO:K17890]
103669551  ATG7; ubiquitin-like modifier-activating enzyme ATG7 isoform X1 [KO:K08337]
103681482  ATG10; LOW QUALITY PROTEIN: ubiquitin-like-conjugating enzyme ATG10 [KO:K17888]
103677317  ATG3; ubiquitin-like-conjugating enzyme ATG3 [KO:K08343]
103662121  GABARAPL2; gamma-aminobutyric acid receptor-associated protein-like 2 [KO:K08341]
103660349  gamma-aminobutyric acid receptor-associated protein isoform X1 [KO:K08341]
103669133  GABARAPL1; gamma-aminobutyric acid receptor-associated protein-like 1 [KO:K08341]
103662804  ATG4B; cysteine protease ATG4B isoform X1 [KO:K08342] [EC:3.4.22.-]
103678722  ATG4D; cysteine protease ATG4D isoform X1 [KO:K08342] [EC:3.4.22.-]
103663067  ATG4C; cysteine protease ATG4C isoform X1 [KO:K08342] [EC:3.4.22.-]
103668914  ATG4A; cysteine protease ATG4A isoform X1 [KO:K08342] [EC:3.4.22.-]
Compound
C00350  Phosphatidylethanolamine
C01194  1-Phosphatidyl-D-myo-inositol
C04549  1-Phosphatidyl-1D-myo-inositol 3-phosphate
Reference
  Authors
Duszenko M, Ginger ML, Brennand A, Gualdron-Lopez M, Colombo MI, Coombs GH, Coppens I, Jayabalasingham B, Langsley G, de Castro SL, Menna-Barreto R, Mottram JC, Navarro M, Rigden DJ, Romano PS, Stoka V, Turk B, Michels PA
  Title
Autophagy in protists.
  Journal
Autophagy 7:127-58 (2011)
DOI:10.4161/auto.7.2.13310
Reference
  Authors
Avin-Wittenberg T, Honig A, Galili G
  Title
Variations on a theme: plant autophagy in comparison to yeast and mammals.
  Journal
Protoplasma 249:285-99 (2012)
DOI:10.1007/s00709-011-0296-z
Reference
  Authors
Liu Y, Bassham DC
  Title
Autophagy: pathways for self-eating in plant cells.
  Journal
Annu Rev Plant Biol 63:215-37 (2012)
DOI:10.1146/annurev-arplant-042811-105441
Reference
  Authors
Yoshimoto K
  Title
Beginning to understand autophagy, an intracellular self-degradation system in plants.
  Journal
Plant Cell Physiol 53:1355-65 (2012)
DOI:10.1093/pcp/pcs099
Reference
  Authors
Li F, Chung T, Vierstra RD
  Title
AUTOPHAGY-RELATED11 plays a critical role in general autophagy- and senescence-induced mitophagy in Arabidopsis.
  Journal
Plant Cell 26:788-807 (2014)
DOI:10.1105/tpc.113.120014
Reference
  Authors
Michaeli S, Galili G, Genschik P, Fernie AR, Avin-Wittenberg T
  Title
Autophagy in Plants--What's New on the Menu?
  Journal
Trends Plant Sci 21:134-44 (2016)
DOI:10.1016/j.tplants.2015.10.008
Reference
  Authors
Yang X, Bassham DC
  Title
New Insight into the Mechanism and Function of Autophagy in Plant Cells.
  Journal
Int Rev Cell Mol Biol 320:1-40 (2015)
DOI:10.1016/bs.ircmb.2015.07.005
KO pathway
ko04136   
LinkDB

DBGET integrated database retrieval system