PATHWAY: vam01100 Help Entry vam01100                    Pathway                                 Name Metabolic pathways - Variovorax sp. PMC12 Class BRITE hierarchy Pathway map vam01100   Metabolic pathways Module vam_M00001   Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:vam01100] vam_M00002   Glycolysis, core module involving three-carbon compounds [PATH:vam01100] vam_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:vam01100] vam_M00004   Pentose phosphate pathway (Pentose phosphate cycle) [PATH:vam01100] vam_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:vam01100] vam_M00006   Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:vam01100] vam_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:vam01100] vam_M00008   Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:vam01100] vam_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:vam01100] vam_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:vam01100] vam_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:vam01100] vam_M00012   Glyoxylate cycle [PATH:vam01100] vam_M00015   Proline biosynthesis, glutamate => proline [PATH:vam01100] vam_M00016   Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:vam01100] vam_M00018   Threonine biosynthesis, aspartate => homoserine => threonine [PATH:vam01100] vam_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:vam01100] vam_M00020   Serine biosynthesis, glycerate-3P => serine [PATH:vam01100] vam_M00021   Cysteine biosynthesis, serine => cysteine [PATH:vam01100] vam_M00022   Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:vam01100] vam_M00023   Tryptophan biosynthesis, chorismate => tryptophan [PATH:vam01100] vam_M00024   Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:vam01100] vam_M00025   Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH:vam01100] vam_M00026   Histidine biosynthesis, PRPP => histidine [PATH:vam01100] vam_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:vam01100] vam_M00044   Tyrosine degradation, tyrosine => homogentisate [PATH:vam01100] vam_M00045   Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:vam01100] vam_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:vam01100] vam_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:vam01100] vam_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:vam01100] vam_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:vam01100] vam_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:vam01100] vam_M00063   CMP-KDO biosynthesis [PATH:vam01100] vam_M00082   Fatty acid biosynthesis, initiation [PATH:vam01100] vam_M00083   Fatty acid biosynthesis, elongation [PATH:vam01100] vam_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:vam01100] vam_M00087   beta-Oxidation [PATH:vam01100] vam_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:vam01100] vam_M00115   NAD biosynthesis, aspartate => quinolinate => NAD [PATH:vam01100] vam_M00118   Glutathione biosynthesis, glutamate => glutathione [PATH:vam01100] vam_M00120   Coenzyme A biosynthesis, pantothenate => CoA [PATH:vam01100] vam_M00121   Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:vam01100] vam_M00122   Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:vam01100] vam_M00123   Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:vam01100] vam_M00125   Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:vam01100] vam_M00126   Tetrahydrofolate biosynthesis, GTP => THF [PATH:vam01100] vam_M00144   NADH:quinone oxidoreductase, prokaryotes [PATH:vam01100] vam_M00149   Succinate dehydrogenase, prokaryotes [PATH:vam01100] vam_M00151   Cytochrome bc1 complex respiratory unit [PATH:vam01100] vam_M00155   Cytochrome c oxidase, prokaryotes [PATH:vam01100] vam_M00156   Cytochrome c oxidase, cbb3-type [PATH:vam01100] vam_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:vam01100] vam_M00168   CAM (Crassulacean acid metabolism), dark [PATH:vam01100] vam_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:vam01100] vam_M00417   Cytochrome o ubiquinol oxidase [PATH:vam01100] vam_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:vam01100] vam_M00531   Assimilatory nitrate reduction, nitrate => ammonia [PATH:vam01100] vam_M00549   Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:vam01100] vam_M00565   Trehalose biosynthesis, D-glucose 1P => trehalose [PATH:vam01100] vam_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:vam01100] vam_M00579   Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:vam01100] vam_M00621   Glycine cleavage system [PATH:vam01100] vam_M00638   Salicylate degradation, salicylate => gentisate [PATH:vam01100] vam_M00793   dTDP-L-rhamnose biosynthesis [PATH:vam01100] vam_M00844   Arginine biosynthesis, ornithine => arginine [PATH:vam01100] vam_M00854   Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:vam01100] vam_M00855   Glycogen degradation, glycogen => glucose-6P [PATH:vam01100] vam_M00880   Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:vam01100] vam_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:vam01100] vam_M00909   UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:vam01100] vam_M00938   Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:vam01100] vam_M00939   Pyrimidine degradation, uracil => 3-hydroxypropanoate [PATH:vam01100] vam_M00958   Adenine ribonucleotide degradation, AMP => Urate [PATH:vam01100] vam_M00959   Guanine ribonucleotide degradation, GMP => Urate [PATH:vam01100] vam_M00970   Proline degradation, proline => glutamate [PATH:vam01100] Organism Variovorax sp. PMC12 [GN:vam] Related pathway vam00010   Glycolysis / Gluconeogenesis vam00020   Citrate cycle (TCA cycle) vam00030   Pentose phosphate pathway vam00040   Pentose and glucuronate interconversions vam00051   Fructose and mannose metabolism vam00052   Galactose metabolism vam00053   Ascorbate and aldarate metabolism vam00061   Fatty acid biosynthesis vam00071   Fatty acid degradation vam00100   Steroid biosynthesis vam00130   Ubiquinone and other terpenoid-quinone biosynthesis vam00190   Oxidative phosphorylation vam00220   Arginine biosynthesis vam00230   Purine metabolism vam00240   Pyrimidine metabolism vam00250   Alanine, aspartate and glutamate metabolism vam00260   Glycine, serine and threonine metabolism vam00261   Monobactam biosynthesis vam00270   Cysteine and methionine metabolism vam00280   Valine, leucine and isoleucine degradation vam00290   Valine, leucine and isoleucine biosynthesis vam00300   Lysine biosynthesis vam00310   Lysine degradation vam00330   Arginine and proline metabolism vam00332   Carbapenem biosynthesis vam00340   Histidine metabolism vam00350   Tyrosine metabolism vam00360   Phenylalanine metabolism vam00361   Chlorocyclohexane and chlorobenzene degradation vam00362   Benzoate degradation vam00364   Fluorobenzoate degradation vam00380   Tryptophan metabolism vam00400   Phenylalanine, tyrosine and tryptophan biosynthesis vam00401   Novobiocin biosynthesis vam00405   Phenazine biosynthesis vam00410   beta-Alanine metabolism vam00430   Taurine and hypotaurine metabolism vam00440   Phosphonate and phosphinate metabolism vam00450   Selenocompound metabolism vam00460   Cyanoamino acid metabolism vam00470   D-Amino acid metabolism vam00480   Glutathione metabolism vam00500   Starch and sucrose metabolism vam00520   Amino sugar and nucleotide sugar metabolism vam00521   Streptomycin biosynthesis vam00523   Polyketide sugar unit biosynthesis vam00525   Acarbose and validamycin biosynthesis vam00540   Lipopolysaccharide biosynthesis vam00541   O-Antigen nucleotide sugar biosynthesis vam00543   Exopolysaccharide biosynthesis vam00550   Peptidoglycan biosynthesis vam00552   Teichoic acid biosynthesis vam00561   Glycerolipid metabolism vam00562   Inositol phosphate metabolism vam00564   Glycerophospholipid metabolism vam00565   Ether lipid metabolism vam00592   alpha-Linolenic acid metabolism vam00620   Pyruvate metabolism vam00621   Dioxin degradation vam00622   Xylene degradation vam00623   Toluene degradation vam00624   Polycyclic aromatic hydrocarbon degradation vam00625   Chloroalkane and chloroalkene degradation vam00626   Naphthalene degradation vam00627   Aminobenzoate degradation vam00630   Glyoxylate and dicarboxylate metabolism vam00633   Nitrotoluene degradation vam00640   Propanoate metabolism vam00642   Ethylbenzene degradation vam00643   Styrene degradation vam00650   Butanoate metabolism vam00660   C5-Branched dibasic acid metabolism vam00670   One carbon pool by folate vam00680   Methane metabolism vam00710   Carbon fixation by Calvin cycle vam00720   Other carbon fixation pathways vam00730   Thiamine metabolism vam00740   Riboflavin metabolism vam00750   Vitamin B6 metabolism vam00760   Nicotinate and nicotinamide metabolism vam00770   Pantothenate and CoA biosynthesis vam00780   Biotin metabolism vam00785   Lipoic acid metabolism vam00790   Folate biosynthesis vam00791   Atrazine degradation vam00860   Porphyrin metabolism vam00900   Terpenoid backbone biosynthesis vam00903   Limonene degradation vam00906   Carotenoid biosynthesis vam00907   Pinene, camphor and geraniol degradation vam00910   Nitrogen metabolism vam00920   Sulfur metabolism vam00930   Caprolactam degradation vam00946   Degradation of flavonoids vam00999   Biosynthesis of various plant secondary metabolites vam01040   Biosynthesis of unsaturated fatty acids KO pathway ko01100     LinkDB All DBs

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