KEGG   PATHWAY: vpk00020
Entry
vpk00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Vibrio parahaemolyticus O1:K33 CDC_K4557
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
vpk00020  Citrate cycle (TCA cycle)
vpk00020

Module
vpk_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:vpk00020]
vpk_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:vpk00020]
vpk_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:vpk00020]
vpk_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:vpk00020]
vpk_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:vpk00020]
Other DBs
GO: 0006099
Organism
Vibrio parahaemolyticus O1:K33 CDC_K4557 [GN:vpk]
Gene
M636_17575  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
M636_09460  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
M636_16630  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
M636_17550  2-oxoglutarate dehydrogenase E1 [KO:K00164] [EC:1.2.4.2]
M636_17545  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
M636_09370  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
M636_17535  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
M636_17540  sucC; malate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
M636_17560  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
M636_17555  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
M636_17570  sdhC; succinate dehydrogenase cytochrome b556 large membrane subunit [KO:K00241]
M636_17565  sdhD; succinate dehydrogenase cytochrome b556 small membrane subunit [KO:K00242]
M636_23225  fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
M636_23220  fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
M636_23215  fumarate reductase [KO:K00246]
M636_23210  fumarate reductase [KO:K00247]
M636_12455  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
M636_23070  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
M636_01750  transcriptional regulator [KO:K01774] [EC:4.2.1.2]
M636_20135  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
M636_21150  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
M636_09360  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
M636_09365  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
vpk00010  Glycolysis / Gluconeogenesis
vpk00053  Ascorbate and aldarate metabolism
vpk00061  Fatty acid biosynthesis
vpk00071  Fatty acid degradation
vpk00190  Oxidative phosphorylation
vpk00220  Arginine biosynthesis
vpk00250  Alanine, aspartate and glutamate metabolism
vpk00280  Valine, leucine and isoleucine degradation
vpk00350  Tyrosine metabolism
vpk00470  D-Amino acid metabolism
vpk00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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