KEGG   PATHWAY: vra00030
Entry
vra00030                    Pathway                                
Name
Pentose phosphate pathway - Vigna radiata (mung bean)
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
vra00030  Pentose phosphate pathway
vra00030

Module
vra_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:vra00030]
vra_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:vra00030]
vra_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:vra00030]
vra_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:vra00030]
Other DBs
GO: 0006098
Organism
Vigna radiata (mung bean) [GN:vra]
Gene
106762818  glucose-6-phosphate isomerase 1, chloroplastic [KO:K01810] [EC:5.3.1.9]
106765254  glucose-6-phosphate isomerase 1, chloroplastic [KO:K01810] [EC:5.3.1.9]
106762473  glucose-6-phosphate isomerase, cytosolic [KO:K01810] [EC:5.3.1.9]
106774378  glucose-6-phosphate isomerase, cytosolic isoform X1 [KO:K01810] [EC:5.3.1.9]
106755436  glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform [KO:K00036] [EC:1.1.1.49 1.1.1.363]
106759394  glucose-6-phosphate 1-dehydrogenase, chloroplastic-like [KO:K00036] [EC:1.1.1.49 1.1.1.363]
106774184  glucose-6-phosphate 1-dehydrogenase, chloroplastic [KO:K00036] [EC:1.1.1.49 1.1.1.363]
106757867  glucose-6-phosphate 1-dehydrogenase 4, chloroplastic [KO:K00036] [EC:1.1.1.49 1.1.1.363]
106768940  glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform [KO:K00036] [EC:1.1.1.49 1.1.1.363]
106753412  probable 6-phosphogluconolactonase 1 [KO:K01057] [EC:3.1.1.31]
106776037  probable 6-phosphogluconolactonase 4, chloroplastic [KO:K01057] [EC:3.1.1.31]
106776038  probable 6-phosphogluconolactonase 4, chloroplastic [KO:K01057] [EC:3.1.1.31]
106759384  6-phosphogluconate dehydrogenase, decarboxylating 3 [KO:K00033] [EC:1.1.1.44 1.1.1.343]
106763663  6-phosphogluconate dehydrogenase, decarboxylating 3 [KO:K00033] [EC:1.1.1.44 1.1.1.343]
106768317  6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic [KO:K00033] [EC:1.1.1.44 1.1.1.343]
106753979  ribulose-phosphate 3-epimerase, cytoplasmic isoform [KO:K01783] [EC:5.1.3.1]
106768264  ribulose-phosphate 3-epimerase, chloroplastic [KO:K01783] [EC:5.1.3.1]
106772090  transketolase, chloroplastic [KO:K00615] [EC:2.2.1.1]
106779858  transketolase, chloroplastic [KO:K00615] [EC:2.2.1.1]
106759456  uncharacterized protein LOC106759456 [KO:K00616] [EC:2.2.1.2]
106765690  uncharacterized protein LOC106765690 [KO:K00616] [EC:2.2.1.2]
106768300  uncharacterized protein LOC106768300 [KO:K00616] [EC:2.2.1.2]
106754592  LOW QUALITY PROTEIN: probable ribose-5-phosphate isomerase 1 [KO:K01807] [EC:5.3.1.6]
106770812  probable ribose-5-phosphate isomerase 2 [KO:K01807] [EC:5.3.1.6]
106774518  probable ribose-5-phosphate isomerase 3, chloroplastic [KO:K01807] [EC:5.3.1.6]
106775859  probable ribose-5-phosphate isomerase 4, chloroplastic [KO:K01807] [EC:5.3.1.6]
106775103  probable ribose-5-phosphate isomerase 3, chloroplastic [KO:K01807] [EC:5.3.1.6]
106769466  probable ribose-5-phosphate isomerase 2 [KO:K01807] [EC:5.3.1.6]
106762504  uncharacterized protein LOC106762504 [KO:K00852] [EC:2.7.1.15]
106773170  uncharacterized protein LOC106773170 [KO:K00852] [EC:2.7.1.15]
106766802  phosphoglucomutase, cytoplasmic [KO:K01835] [EC:5.4.2.2]
106771896  phosphoglucomutase, chloroplastic [KO:K01835] [EC:5.4.2.2]
106765533  ribose-phosphate pyrophosphokinase 1 [KO:K00948] [EC:2.7.6.1]
106774083  ribose-phosphate pyrophosphokinase 1 isoform X1 [KO:K00948] [EC:2.7.6.1]
106768525  NADP-dependent glyceraldehyde-3-phosphate dehydrogenase [KO:K00131] [EC:1.2.1.9]
106764017  NADP-dependent glyceraldehyde-3-phosphate dehydrogenase [KO:K00131] [EC:1.2.1.9]
106779870  uncharacterized protein LOC106779870 [KO:K00851] [EC:2.7.1.12]
106762005  fructose-bisphosphate aldolase 1, chloroplastic [KO:K01623] [EC:4.1.2.13]
106765223  fructose-bisphosphate aldolase, cytoplasmic isozyme 1 [KO:K01623] [EC:4.1.2.13]
106771120  fructose-bisphosphate aldolase 6, cytosolic [KO:K01623] [EC:4.1.2.13]
106780539  fructose-bisphosphate aldolase 1, chloroplastic [KO:K01623] [EC:4.1.2.13]
106757953  fructose-bisphosphate aldolase 6, cytosolic [KO:K01623] [EC:4.1.2.13]
106764932  fructose-bisphosphate aldolase, cytoplasmic isozyme [KO:K01623] [EC:4.1.2.13]
106772501  fructose-bisphosphate aldolase 3, chloroplastic [KO:K01623] [EC:4.1.2.13]
106754509  fructose-1,6-bisphosphatase, chloroplastic [KO:K03841] [EC:3.1.3.11]
106765747  fructose-1,6-bisphosphatase, chloroplastic [KO:K03841] [EC:3.1.3.11]
106775484  fructose-1,6-bisphosphatase, cytosolic [KO:K03841] [EC:3.1.3.11]
106772585  fructose-1,6-bisphosphatase, cytosolic [KO:K03841] [EC:3.1.3.11]
106772717  fructose-1,6-bisphosphatase, cytosolic [KO:K03841] [EC:3.1.3.11]
106780236  ATP-dependent 6-phosphofructokinase 5, chloroplastic [KO:K00850] [EC:2.7.1.11]
106773835  ATP-dependent 6-phosphofructokinase 3 isoform X1 [KO:K00850] [EC:2.7.1.11]
106766865  ATP-dependent 6-phosphofructokinase 3 [KO:K00850] [EC:2.7.1.11]
106776785  ATP-dependent 6-phosphofructokinase 5, chloroplastic [KO:K00850] [EC:2.7.1.11]
106772371  ATP-dependent 6-phosphofructokinase 4, chloroplastic isoform X1 [KO:K00850] [EC:2.7.1.11]
106762153  ATP-dependent 6-phosphofructokinase 3-like [KO:K00850] [EC:2.7.1.11]
106762554  ATP-dependent 6-phosphofructokinase 6 [KO:K00850] [EC:2.7.1.11]
106765482  ATP-dependent 6-phosphofructokinase 2 [KO:K00850] [EC:2.7.1.11]
106774415  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta [KO:K00895] [EC:2.7.1.90]
106769029  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta [KO:K00895] [EC:2.7.1.90]
106777825  pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha [KO:K00895] [EC:2.7.1.90]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
vra00010  Glycolysis / Gluconeogenesis
vra00040  Pentose and glucuronate interconversions
vra00052  Galactose metabolism
vra00230  Purine metabolism
vra00240  Pyrimidine metabolism
vra00340  Histidine metabolism
vra00630  Glyoxylate and dicarboxylate metabolism
vra00750  Vitamin B6 metabolism
KO pathway
ko00030   
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