KEGG   PATHWAY: vvi00270
Entry
vvi00270                    Pathway                                
Name
Cysteine and methionine metabolism - Vitis vinifera (wine grape)
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
vvi00270  Cysteine and methionine metabolism
vvi00270

Module
vvi_M00021  Cysteine biosynthesis, serine => cysteine [PATH:vvi00270]
vvi_M00034  Methionine salvage pathway [PATH:vvi00270]
vvi_M00368  Ethylene biosynthesis, methionine => ethylene [PATH:vvi00270]
Other DBs
GO: 0006534 0006555
Organism
Vitis vinifera (wine grape) [GN:vvi]
Gene
100260128  serine acetyltransferase 1, chloroplastic [KO:K00640] [EC:2.3.1.30]
100264650  serine acetyltransferase 5 [KO:K00640] [EC:2.3.1.30]
100246391  SERAT; serine acetyltransferase 1, chloroplastic [KO:K00640] [EC:2.3.1.30]
100233047  probable serine acetyltransferase 2 [KO:K00640] [EC:2.3.1.30]
100252170  cysteine synthase [KO:K01738] [EC:2.5.1.47]
100247043  cysteine synthase [KO:K01738] [EC:2.5.1.47]
100854804  cysteine synthase [KO:K01738] [EC:2.5.1.47]
109121422  cysteine synthase-like [KO:K01738] [EC:2.5.1.47]
100264196  cysteine synthase [KO:K01738] [EC:2.5.1.47]
100260099  cysteine synthase 2 [KO:K01738] [EC:2.5.1.47]
100854639  cysteine synthase [KO:K01738] [EC:2.5.1.47]
100241908  cysteine synthase [KO:K01738] [EC:2.5.1.47]
100233046  cysteine synthase, chloroplastic/chromoplastic isoform X1 [KO:K01738] [EC:2.5.1.47]
100255091  bifunctional L-3-cyanoalanine synthase/cysteine synthase 1, mitochondrial isoform X2 [KO:K13034] [EC:2.5.1.47 4.4.1.9]
100260731  cystathionine beta-lyase, chloroplastic isoform X1 [KO:K01760] [EC:4.4.1.13]
100247323  homocysteine S-methyltransferase 1 [KO:K00547] [EC:2.1.1.10]
100852835  homocysteine S-methyltransferase 2 [KO:K00547] [EC:2.1.1.10]
100264835  homocysteine S-methyltransferase 3 isoform X2 [KO:K00547] [EC:2.1.1.10]
100248500  5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [KO:K00549] [EC:2.1.1.14]
100242762  5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 2 [KO:K00549] [EC:2.1.1.14]
100243560  METK5; S-adenosylmethionine synthase 5 [KO:K00789] [EC:2.5.1.6]
100245243  METK3; S-adenosylmethionine synthase 3 [KO:K00789] [EC:2.5.1.6]
100251171  METK4; S-adenosylmethionine synthase 4 [KO:K00789] [EC:2.5.1.6]
100244176  METK2; S-adenosylmethionine synthase 2 [KO:K00789] [EC:2.5.1.6]
100263678  METK1; S-adenosylmethionine synthase 1 [KO:K00789] [EC:2.5.1.6]
100240686  SAMDC; S-adenosylmethionine decarboxylase proenzyme [KO:K01611] [EC:4.1.1.50]
100265287  S-adenosylmethionine decarboxylase proenzyme [KO:K01611] [EC:4.1.1.50]
100261356  S-adenosylmethionine decarboxylase proenzyme 4 [KO:K01611] [EC:4.1.1.50]
100257112  spermidine synthase 2 [KO:K00797] [EC:2.5.1.16]
100243226  spermidine synthase 2 [KO:K00797] [EC:2.5.1.16]
100232840  spermine synthase [KO:K00797] [EC:2.5.1.16]
100254544  nicotianamine synthase [KO:K05953] [EC:2.5.1.43]
100244492  nicotianamine synthase [KO:K05953] [EC:2.5.1.43]
100233110  GRIP58; ripening-related protein-like [KO:K01244] [EC:3.2.2.16]
100242426  methylthioribose kinase [KO:K00899] [EC:2.7.1.100]
100264709  methylthioribose kinase [KO:K00899] [EC:2.7.1.100]
100268031  M1PI; methylthioribose-1-phosphate isomerase [KO:K08963] [EC:5.3.1.23]
100257258  probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 1 [KO:K16054] [EC:4.2.1.109 3.1.3.77]
100247253  probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 2 isoform X1 [KO:K16054] [EC:4.2.1.109 3.1.3.77]
100232920  SIP; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 [KO:K08967] [EC:1.13.11.53 1.13.11.54]
104879260  acireductone dioxygenase 1 [KO:K08967] [EC:1.13.11.53 1.13.11.54]
104882468  uncharacterized protein LOC104882468 [KO:K23977] [EC:2.6.1.117]
100259032  nicotianamine aminotransferase 1 isoform X1 [KO:K00815] [EC:2.6.1.5]
100242005  tyrosine aminotransferase [KO:K00815] [EC:2.6.1.5]
100253895  nicotianamine aminotransferase 1 isoform X1 [KO:K00815] [EC:2.6.1.5]
100241782  probable aminotransferase TAT2 [KO:K00815] [EC:2.6.1.5]
100248010  aromatic aminotransferase ISS1 [KO:K00837] [EC:2.6.1.-]
100255998  aromatic aminotransferase ISS1 [KO:K00837] [EC:2.6.1.-]
100253026  methionine gamma-lyase [KO:K01761] [EC:4.4.1.11]
100252276  DNA (cytosine-5)-methyltransferase 1B [KO:K00558] [EC:2.1.1.37]
100255190  DNA (cytosine-5)-methyltransferase CMT2 isoform X1 [KO:K00558] [EC:2.1.1.37]
100249359  DNA (cytosine-5)-methyltransferase CMT2 isoform X1 [KO:K00558] [EC:2.1.1.37]
100258788  DNA (cytosine-5)-methyltransferase CMT3 [KO:K00558] [EC:2.1.1.37]
100240896  DNA (cytosine-5)-methyltransferase 1 isoform X1 [KO:K00558] [EC:2.1.1.37]
100251127  DNA (cytosine-5)-methyltransferase 1 [KO:K00558] [EC:2.1.1.37]
100252100  putative DNA (cytosine-5)-methyltransferase CMT1 [KO:K00558] [EC:2.1.1.37]
100259614  PWWP domain-containing protein 1 [KO:K17398] [EC:2.1.1.37]
100265604  adenosylhomocysteinase [KO:K01251] [EC:3.13.2.1]
100253872  adenosylhomocysteinase [KO:K01251] [EC:3.13.2.1]
100261943  1-aminocyclopropane-1-carboxylate synthase 1 [KO:K20772] [EC:4.4.1.14]
100263876  1-aminocyclopropane-1-carboxylate synthase [KO:K20772] [EC:4.4.1.14]
100261151  1-aminocyclopropane-1-carboxylate synthase 7 [KO:K01762] [EC:4.4.1.14]
100258512  1-aminocyclopropane-1-carboxylate synthase 3 [KO:K01762] [EC:4.4.1.14]
100250639  1-aminocyclopropane-1-carboxylate synthase 3 [KO:K01762] [EC:4.4.1.14]
100251690  1-aminocyclopropane-1-carboxylate synthase 7 [KO:K01762] [EC:4.4.1.14]
100252394  1-aminocyclopropane-1-carboxylate oxidase 5 [KO:K05933] [EC:1.14.17.4]
100232928  1-aminocyclopropane-1-carboxylate oxidase [KO:K05933] [EC:1.14.17.4]
100256784  ACO2; 1-aminocyclopropane-1-carboxylic acid oxidase 2 [KO:K05933] [EC:1.14.17.4]
100257676  1-aminocyclopropane-1-carboxylate oxidase 1 [KO:K05933] [EC:1.14.17.4]
100267777  aspartokinase 1, chloroplastic isoform X1 [KO:K00928] [EC:2.7.2.4]
100260089  aspartokinase 2, chloroplastic isoform X2 [KO:K00928] [EC:2.7.2.4]
100258602  bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic isoform X1 [KO:K12524] [EC:2.7.2.4 1.1.1.3]
100245641  uncharacterized protein LOC100245641 [KO:K00133] [EC:1.2.1.11]
100267880  cystathionine gamma-synthase 1, chloroplastic isoform X2 [KO:K01739] [EC:2.5.1.48]
100853545  branched-chain amino acid aminotransferase 2, chloroplastic [KO:K00826] [EC:2.6.1.42]
100266106  branched-chain-amino-acid aminotransferase 2, chloroplastic [KO:K00826] [EC:2.6.1.42]
100260903  branched-chain-amino-acid aminotransferase 2, chloroplastic [KO:K00826] [EC:2.6.1.42]
100243935  alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial [KO:K00827] [EC:2.6.1.44 2.6.1.40]
100251671  alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial [KO:K00827] [EC:2.6.1.44 2.6.1.40]
100258727  alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial [KO:K00827] [EC:2.6.1.44 2.6.1.40]
100266723  glutamate--cysteine ligase, chloroplastic [KO:K01919] [EC:6.3.2.2]
100254472  glutathione synthetase, chloroplastic isoform X1 [KO:K21456] [EC:6.3.2.3]
100268005  aspartate aminotransferase, cytoplasmic [KO:K14454] [EC:2.6.1.1]
100256163  aspartate aminotransferase, cytoplasmic [KO:K14454] [EC:2.6.1.1]
100254127  aspartate aminotransferase, mitochondrial [KO:K14455] [EC:2.6.1.1]
100243028  aspartate aminotransferase, mitochondrial [KO:K14455] [EC:2.6.1.1]
100242364  aspartate aminotransferase, chloroplastic [KO:K00811] [EC:2.6.1.1]
100261543  thiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial isoform X2 [KO:K01011] [EC:2.8.1.1 2.8.1.2]
100248878  L-lactate dehydrogenase B [KO:K00016] [EC:1.1.1.27]
100250615  L-lactate dehydrogenase A [KO:K00016] [EC:1.1.1.27]
100259161  putative D-cysteine desulfhydrase 1, mitochondrial [KO:K05396] [EC:4.4.1.15]
100247322  D-cysteine desulfhydrase 2, mitochondrial isoform X1 [KO:K05396] [EC:4.4.1.15]
100243446  L-cysteine desulfhydrase [KO:K22207] [EC:4.4.1.28]
100244282  probable L-cysteine desulfhydrase, chloroplastic [KO:K22207] [EC:4.4.1.28]
100248145  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
100253273  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
100256452  malate dehydrogenase isoform X4 [KO:K00025] [EC:1.1.1.37]
100260994  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
100247511  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
100265585  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
100253724  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
100232859  MDH; malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
100232924  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
100267217  cysteine synthase [KO:K22846] [EC:2.5.1.144]
100259056  D-3-phosphoglycerate dehydrogenase 3, chloroplastic [KO:K00058] [EC:1.1.1.95 1.1.1.399]
100260655  D-3-phosphoglycerate dehydrogenase 3, chloroplastic [KO:K00058] [EC:1.1.1.95 1.1.1.399]
100241666  D-3-phosphoglycerate dehydrogenase 3, chloroplastic [KO:K00058] [EC:1.1.1.95 1.1.1.399]
100854216  phosphoserine aminotransferase 2, chloroplastic [KO:K00831] [EC:2.6.1.52]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
vvi00010  Glycolysis / Gluconeogenesis
vvi00250  Alanine, aspartate and glutamate metabolism
vvi00260  Glycine, serine and threonine metabolism
vvi00290  Valine, leucine and isoleucine biosynthesis
vvi00430  Taurine and hypotaurine metabolism
vvi00480  Glutathione metabolism
vvi00620  Pyruvate metabolism
vvi00640  Propanoate metabolism
vvi00770  Pantothenate and CoA biosynthesis
vvi00900  Terpenoid backbone biosynthesis
vvi00920  Sulfur metabolism
KO pathway
ko00270   
LinkDB

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