KEGG   PATHWAY: yrb01100
Entry
yrb01100                    Pathway                                
Name
Metabolic pathways - Yersinia ruckeri Big Creek 74 (serotype O2)
Class
Pathway map
yrb01100  Metabolic pathways
yrb01100

Module
yrb_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:yrb01100]
yrb_M00002  Glycolysis, core module involving three-carbon compounds [PATH:yrb01100]
yrb_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:yrb01100]
yrb_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:yrb01100]
yrb_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:yrb01100]
yrb_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:yrb01100]
yrb_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:yrb01100]
yrb_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:yrb01100]
yrb_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:yrb01100]
yrb_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:yrb01100]
yrb_M00012  Glyoxylate cycle [PATH:yrb01100]
yrb_M00015  Proline biosynthesis, glutamate => proline [PATH:yrb01100]
yrb_M00016  Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:yrb01100]
yrb_M00017  Methionine biosynthesis, aspartate => homoserine => methionine [PATH:yrb01100]
yrb_M00018  Threonine biosynthesis, aspartate => homoserine => threonine [PATH:yrb01100]
yrb_M00019  Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:yrb01100]
yrb_M00020  Serine biosynthesis, glycerate-3P => serine [PATH:yrb01100]
yrb_M00021  Cysteine biosynthesis, serine => cysteine [PATH:yrb01100]
yrb_M00022  Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:yrb01100]
yrb_M00023  Tryptophan biosynthesis, chorismate => tryptophan [PATH:yrb01100]
yrb_M00024  Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:yrb01100]
yrb_M00025  Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH:yrb01100]
yrb_M00026  Histidine biosynthesis, PRPP => histidine [PATH:yrb01100]
yrb_M00028  Ornithine biosynthesis, glutamate => ornithine [PATH:yrb01100]
yrb_M00045  Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH:yrb01100]
yrb_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:yrb01100]
yrb_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:yrb01100]
yrb_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:yrb01100]
yrb_M00051  De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:yrb01100]
yrb_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:yrb01100]
yrb_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:yrb01100]
yrb_M00060  KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type [PATH:yrb01100]
yrb_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:yrb01100]
yrb_M00063  CMP-KDO biosynthesis [PATH:yrb01100]
yrb_M00064  ADP-L-glycero-D-manno-heptose biosynthesis [PATH:yrb01100]
yrb_M00082  Fatty acid biosynthesis, initiation [PATH:yrb01100]
yrb_M00083  Fatty acid biosynthesis, elongation [PATH:yrb01100]
yrb_M00086  beta-Oxidation, acyl-CoA synthesis [PATH:yrb01100]
yrb_M00087  beta-Oxidation [PATH:yrb01100]
yrb_M00093  Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:yrb01100]
yrb_M00115  NAD biosynthesis, aspartate => quinolinate => NAD [PATH:yrb01100]
yrb_M00116  Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH:yrb01100]
yrb_M00117  Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH:yrb01100]
yrb_M00118  Glutathione biosynthesis, glutamate => glutathione [PATH:yrb01100]
yrb_M00119  Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:yrb01100]
yrb_M00120  Coenzyme A biosynthesis, pantothenate => CoA [PATH:yrb01100]
yrb_M00121  Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:yrb01100]
yrb_M00123  Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:yrb01100]
yrb_M00124  Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH:yrb01100]
yrb_M00125  Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:yrb01100]
yrb_M00126  Tetrahydrofolate biosynthesis, GTP => THF [PATH:yrb01100]
yrb_M00127  Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP [PATH:yrb01100]
yrb_M00140  C1-unit interconversion, prokaryotes [PATH:yrb01100]
yrb_M00144  NADH:quinone oxidoreductase, prokaryotes [PATH:yrb01100]
yrb_M00149  Succinate dehydrogenase, prokaryotes [PATH:yrb01100]
yrb_M00150  Fumarate reductase, prokaryotes [PATH:yrb01100]
yrb_M00157  F-type ATPase, prokaryotes and chloroplasts [PATH:yrb01100]
yrb_M00168  CAM (Crassulacean acid metabolism), dark [PATH:yrb01100]
yrb_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:yrb01100]
yrb_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:yrb01100]
yrb_M00338  Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:yrb01100]
yrb_M00417  Cytochrome o ubiquinol oxidase [PATH:yrb01100]
yrb_M00432  Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:yrb01100]
yrb_M00530  Dissimilatory nitrate reduction, nitrate => ammonia [PATH:yrb01100]
yrb_M00549  Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:yrb01100]
yrb_M00550  Ascorbate degradation, ascorbate => D-xylulose-5P [PATH:yrb01100]
yrb_M00554  Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:yrb01100]
yrb_M00570  Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:yrb01100]
yrb_M00572  Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH:yrb01100]
yrb_M00579  Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:yrb01100]
yrb_M00621  Glycine cleavage system [PATH:yrb01100]
yrb_M00631  D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:yrb01100]
yrb_M00632  Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:yrb01100]
yrb_M00761  Undecaprenylphosphate alpha-L-Ara4N biosynthesis, UDP-GlcA => undecaprenyl phosphate alpha-L-Ara4N [PATH:yrb01100]
yrb_M00844  Arginine biosynthesis, ornithine => arginine [PATH:yrb01100]
yrb_M00846  Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:yrb01100]
yrb_M00854  Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:yrb01100]
yrb_M00855  Glycogen degradation, glycogen => glucose-6P [PATH:yrb01100]
yrb_M00880  Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:yrb01100]
yrb_M00881  Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:yrb01100]
yrb_M00909  UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:yrb01100]
yrb_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:yrb01100]
yrb_M00970  Proline degradation, proline => glutamate [PATH:yrb01100]
Organism
Yersinia ruckeri Big Creek 74 (serotype O2) [GN:yrb]
Related
pathway
yrb00010  Glycolysis / Gluconeogenesis
yrb00020  Citrate cycle (TCA cycle)
yrb00030  Pentose phosphate pathway
yrb00040  Pentose and glucuronate interconversions
yrb00051  Fructose and mannose metabolism
yrb00052  Galactose metabolism
yrb00053  Ascorbate and aldarate metabolism
yrb00061  Fatty acid biosynthesis
yrb00071  Fatty acid degradation
yrb00130  Ubiquinone and other terpenoid-quinone biosynthesis
yrb00190  Oxidative phosphorylation
yrb00220  Arginine biosynthesis
yrb00230  Purine metabolism
yrb00240  Pyrimidine metabolism
yrb00250  Alanine, aspartate and glutamate metabolism
yrb00260  Glycine, serine and threonine metabolism
yrb00261  Monobactam biosynthesis
yrb00270  Cysteine and methionine metabolism
yrb00280  Valine, leucine and isoleucine degradation
yrb00290  Valine, leucine and isoleucine biosynthesis
yrb00300  Lysine biosynthesis
yrb00310  Lysine degradation
yrb00330  Arginine and proline metabolism
yrb00332  Carbapenem biosynthesis
yrb00340  Histidine metabolism
yrb00350  Tyrosine metabolism
yrb00360  Phenylalanine metabolism
yrb00361  Chlorocyclohexane and chlorobenzene degradation
yrb00362  Benzoate degradation
yrb00364  Fluorobenzoate degradation
yrb00380  Tryptophan metabolism
yrb00400  Phenylalanine, tyrosine and tryptophan biosynthesis
yrb00401  Novobiocin biosynthesis
yrb00410  beta-Alanine metabolism
yrb00430  Taurine and hypotaurine metabolism
yrb00440  Phosphonate and phosphinate metabolism
yrb00450  Selenocompound metabolism
yrb00460  Cyanoamino acid metabolism
yrb00470  D-Amino acid metabolism
yrb00480  Glutathione metabolism
yrb00500  Starch and sucrose metabolism
yrb00511  Other glycan degradation
yrb00520  Amino sugar and nucleotide sugar metabolism
yrb00521  Streptomycin biosynthesis
yrb00523  Polyketide sugar unit biosynthesis
yrb00525  Acarbose and validamycin biosynthesis
yrb00540  Lipopolysaccharide biosynthesis
yrb00541  O-Antigen nucleotide sugar biosynthesis
yrb00542  O-Antigen repeat unit biosynthesis
yrb00543  Exopolysaccharide biosynthesis
yrb00550  Peptidoglycan biosynthesis
yrb00552  Teichoic acid biosynthesis
yrb00561  Glycerolipid metabolism
yrb00562  Inositol phosphate metabolism
yrb00564  Glycerophospholipid metabolism
yrb00565  Ether lipid metabolism
yrb00592  alpha-Linolenic acid metabolism
yrb00600  Sphingolipid metabolism
yrb00620  Pyruvate metabolism
yrb00623  Toluene degradation
yrb00625  Chloroalkane and chloroalkene degradation
yrb00626  Naphthalene degradation
yrb00627  Aminobenzoate degradation
yrb00630  Glyoxylate and dicarboxylate metabolism
yrb00633  Nitrotoluene degradation
yrb00640  Propanoate metabolism
yrb00650  Butanoate metabolism
yrb00660  C5-Branched dibasic acid metabolism
yrb00670  One carbon pool by folate
yrb00680  Methane metabolism
yrb00730  Thiamine metabolism
yrb00740  Riboflavin metabolism
yrb00750  Vitamin B6 metabolism
yrb00760  Nicotinate and nicotinamide metabolism
yrb00770  Pantothenate and CoA biosynthesis
yrb00780  Biotin metabolism
yrb00785  Lipoic acid metabolism
yrb00790  Folate biosynthesis
yrb00860  Porphyrin metabolism
yrb00900  Terpenoid backbone biosynthesis
yrb00907  Pinene, camphor and geraniol degradation
yrb00910  Nitrogen metabolism
yrb00920  Sulfur metabolism
yrb00930  Caprolactam degradation
yrb00999  Biosynthesis of various plant secondary metabolites
yrb01040  Biosynthesis of unsaturated fatty acids
yrb01053  Biosynthesis of siderophore group nonribosomal peptides
KO pathway
ko01100   
LinkDB

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