Pectobacterium atrosepticum JG10-08: EV46_13810
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Entry
EV46_13810 CDS
T03199
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
patr
Pectobacterium atrosepticum JG10-08
Pathway
patr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
patr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EV46_13810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
patr03400
]
EV46_13810
DNA repair and recombination proteins [BR:
patr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EV46_13810
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
EV46_13810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
SBDS_domain_II
UB2H
AAA_30
AAA_22
DUF87
Motif
Other DBs
NCBI-ProteinID:
AIA71638
LinkDB
All DBs
Position
complement(3101161..3103173)
Genome browser
AA seq
670 aa
AA seq
DB search
MSKAFTLNSDFKPAGDQPEAIRRLKEGLEDGLAHQTLLGVTGSGKTFTIANVIADLNRPT
MMLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE
QMRLSATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTQGMLIDQRAILRRLAELQ
YARNDQAFQRGTFRVRGEVIDIFPAESDEIALRVELFDEEVERLSLFDPLTGHVLQTVPR
YTIYPKTHYVTPRERILQAMEDIKVELADRKKVLLANDKLVEEQRLSQRTQFDLEMMNEL
GYCSGIENYSRYLSGRGPGEPPPTLFDYLPADGLLVIDESHVTVPQIGGMYRGDRARKET
LVEYGFRLPSALDNRPMKFEEFEALAPQTIYVSATPSHYELEKSGGDVIDQVVRPTGLLD
PIIEVRPVGTQVDDLLSEIRLRAAINERVLVTTLTKRMAEDLTEYLQEHGERVRYLHSDI
DTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG
RAARNLRGKAILYGDRITASMAKAISETERRREKQEAYNTEHGIVPQGINKKISDILQLG
QSANKGKGRGNRKAAEPAARYELMTPKALELKIRELESKMLTHAQNLEFEEAASLRDEVQ
VLRAQFIAIS
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaagcattcacactgaattccgactttaaaccggcaggcgatcagcctgaggcc
attcgtcgtttaaaggaaggtctggaggacgggttggcgcaccaaacgctgctcggggta
acaggctcaggtaagacgttcacgatagccaacgtgattgccgatctcaatcggccgacg
atgatgctggcaccgaataaaacgctggcagctcaactgtacggcgaaatgaaagaattc
ttccccgagaatgccgtggagtacttcgtctcgtactacgactattatcagcctgaggcc
tacgttccgagctcggatacctttatcgagaaagacgcgtctgttaacgaacatatcgag
cagatgcgtctttccgcgacaaaagcgctgctggagcggcgtgatgtgatcgtcgtggct
tcggtgtccgctatctatggtctgggcgatcccgatctctatctgaaaatgatgctgcac
ctgacgcaggggatgctgatcgaccagcgtgccattttacgtcgtttggctgaattgcaa
tatgcccgcaacgatcaggcatttcagcgcggtacgtttcgcgtgcggggcgaggtgatc
gatatcttccctgcggagtctgacgaaatcgcactgcgcgttgaattgttcgatgaagaa
gtggaacgcctgtcgctgtttgacccgctgacggggcatgtcctccaaacggtgccgcgc
tataccatctacccgaaaacgcactatgtgacgccgcgtgagcgtattttgcaggcgatg
gaagacatcaaagttgaattggccgatcgcaagaaggtactactggcgaacgataagctg
gtggaggagcagcgactgagccagcgcacgcagtttgatctggagatgatgaacgaactg
gggtactgctccggcatcgaaaactactcacgctatctctctggacgtggccccggtgaa
ccgccaccgacactgtttgactatcttcctgctgatgggctactggtcattgatgaatct
cacgtcactgtgccccagatcggcggtatgtatcgcggcgaccgtgcgcgtaaagagacg
ctggtcgaatacggtttccggctgccttccgcgctggataaccggccgatgaaatttgaa
gaatttgaagcgctggccccgcagacgatctatgtgtctgcgacgccgagtcactatgaa
ctggaaaaatcgggcggtgacgttatcgatcaggtggtccgtcccactggattgctcgat
ccgatcattgaagtacggcctgtcgggacacaagtggatgacctgctttccgagattcgc
ctgcgtgcagcgattaacgaacgtgtgctggtgacgacgttgaccaagcggatggcggaa
gatctgacggaatatctgcaagaacacggcgagcgggtacgttatctgcactcggatatt
gataccgtcgagcgtgtggaaatcatccgtgatttgcgcctgggtgaatttgacgtgctg
gtgggcatcaacttgctgcgtgaagggctggatatgcctgaagtgtcgctggtggcgatt
ctggatgccgacaaagagggctttttgcgatccgaacgttccctaatccagacgattggc
cgcgcggcgcgtaacctgcgcggcaaggccattctttacggcgacaggattacggcgtcg
atggcgaaagcgattagcgaaacggaacgccgccgcgagaagcaggaagcctacaacact
gaacacgggattgtgccgcaggggatcaataagaagatttccgatattttgcaactcgga
cagtctgcgaacaaaggcaaagggcgaggtaatcgtaaagcggcagaaccggcagcgcgt
tatgaacttatgacgccgaaggcgctggaactgaaaattcgcgagttggaaagtaagatg
ctgacacatgcgcagaaccttgaatttgaagaggcggcttccctgcgcgatgaggtacag
gtattacgcgcgcaatttatcgcgatatcgtag
DBGET
integrated database retrieval system
