Pseudonocardia autotrophica: Pdca_34170
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Entry
Pdca_34170 CDS
T06156
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
paut
Pseudonocardia autotrophica
Pathway
paut03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
paut00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Pdca_34170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paut03400
]
Pdca_34170
Enzymes [BR:
paut01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Pdca_34170
DNA repair and recombination proteins [BR:
paut03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Pdca_34170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
Motif
Other DBs
NCBI-ProteinID:
BBG02208
LinkDB
All DBs
Position
complement(3580690..3582699)
Genome browser
AA seq
669 aa
AA seq
DB search
MLAHKARTPPDRYAARVPLEEYRRRRDPRRTPEPVPETDPAPSGPKPDGPGGGRFVVQEH
HATALHWDLRLERDGVLVSWAVPKGLPEDSETVRMAVRTEDHPLEYLDFQGEIPRGEYGG
GRMSVWDSGHYDTEKWTDREVAVVLHGARAAGRFVLLHRPGERRDRWLLRRTRAQPAGAP
APGAPLPRDLALAVPSPAQRLPAGADWQVRPVFGGRRVLVRSDGGRLTLCPVGDDGMPGD
PIDPPGRLRELGPALGAGGHLLDAELTGRGELWIADVLHTGGRDVRALPLDDRRALLEAL
PLDGPQRRAAPLYPNAGAPLLDAVRAQGLPGVVAVRSGSAYPAGGAPSEDWREVPVGGSR
SRGAQPDGHGRATLSNPHKVLYPATGTTKADVLGHYLAVAEAMLPHIDGRPATLKRWPDG
VAASSFFEKNVSRHAPSWLRTARVGTPGGRSESADFAVIADAEGLAWAANLAALELHVPQ
WRLGARDARHPPDRVVFDLDPGEGTTVVDCCRVALRLRALLDDHGLPVYPSTSGGKGMQL
YLPVRVSRPERTSEFAREVAERLAAEHPRETIAVMTRARRRGKVFVDWSQNNTAKTTIAS
YSLRGRELPTVATPLTWDEVAACREPGDLLFTIDDLPGRLDTHGDLMRPLIDTDGFRLPR
GGAIAEVPG
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgcttgcccacaaggcccggacgcctccggatcgctacgctgcgcgggtgccgctggag
gagtaccgccgcaggcgcgacccgcggcgcaccccggagccggtcccggagaccgatccg
gcgccgagcggtccgaagccggatggccccggcggcggtcgcttcgtggtccaggagcac
cacgccaccgcgctgcactgggacctacgactggaacgcgacggtgtgctcgtctcgtgg
gcggtgcccaagggactgccggaggactcggagaccgtgcggatggccgtccgtaccgag
gaccatccgctggagtacctggacttccagggcgagatcccgcgcggcgagtacggcggc
gggcggatgtcggtgtgggactccggccactacgacaccgagaagtggaccgaccgcgag
gtggccgtggtcctgcacggcgcgcgcgccgcgggccggttcgtgctgctgcaccggccg
ggtgagcgccgggaccgctggctgctgcggcgcacccgggcgcagccggccggtgcgccc
gcgcccggtgcaccgctcccccgcgatctcgcactcgccgtcccgagcccggcacagcgt
ctccccgccggtgcggactggcaggtccggccggtgttcggtggacgccgcgtgctggtc
cgcagcgacggcggccggctcacgctgtgcccggtcggcgacgacggcatgcccggcgac
ccgatcgacccgcccggccggctgcgcgagctgggcccggcgctcggggcgggcgggcac
ctgctcgacgccgagctcaccgggcgcggtgagttgtggatcgccgacgtgctgcacacg
ggtgggcgcgacgtccgggcactccccctcgacgaccgtcgcgcactgctggaggcgctg
ccgctggacggcccgcagcgccgtgcggccccgctgtacccgaacgcgggcgcaccgctg
ctcgacgcggtgcgggcacaggggctgccgggggtggtcgccgtccgttccggatcggcc
tacccggcgggcggtgcgccctcggaggactggcgggaggttccggtgggtggatcgagg
agccgcggagcgcagccggacggccacggccgcgcgacgctgtccaacccgcacaaggtg
ctctacccggcgaccggcaccacgaaggccgacgtgctcggtcactacctggccgtcgcc
gaggcgatgctgccacacatcgacggccgtccggcgaccctgaagcgctggccggacggg
gtcgccgcgtcgtcgttcttcgagaagaacgtctcccggcacgcgccgtcctggctgcgt
accgcccgggtcgggacgcccggcgggcgatcggagtcggccgacttcgcggtgatcgcc
gacgccgagggcctggcctgggcggcgaacctggcggcgctggagctgcacgtgccgcag
tggcgcctcggcgcccgggacgcacggcatccgccggaccgggtggtgttcgatctcgac
ccgggcgaggggacgacggtggtggactgctgccgggtcgcgctgcggctacgtgcgctg
ctcgacgaccacgggctgccggtgtacccgtcgacgtccgggggcaaggggatgcagctc
tacctgccggtgcgggtcagccggccggagcggacctcggagttcgcccgggaggtcgcc
gagcggctcgccgccgaacacccgcgggagacgatcgcggtgatgacccgcgcgcggcgc
cgcgggaaggtgttcgtcgactggagccagaacaacacggcgaagaccacgatcgcgtcg
tactcgttgcgcggacgggagctaccgaccgtcgcgaccccgctgacctgggacgaggtg
gcggcctgccgtgaacccggggacctgctgttcaccatcgacgacctgccgggacggctg
gacacgcacggggacctgatgcgtcccctgatcgacaccgacggtttccggctcccccgt
ggtggcgcgatcgccgaggtgccaggctga
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