Cutibacterium acnes TypeIA2 P.acn17: TIA2EST22_02710
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Entry
TIA2EST22_02710 CDS
T01654
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pav
Cutibacterium acnes TypeIA2 P.acn17
Pathway
pav03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TIA2EST22_02710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pav03400
]
TIA2EST22_02710
Enzymes [BR:
pav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TIA2EST22_02710
DNA repair and recombination proteins [BR:
pav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
TIA2EST22_02710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
RecG_dom3_C
UB2H
Glyco_tran_WecG
MFD_D3
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AEW80872
LinkDB
All DBs
Position
584274..587903
Genome browser
AA seq
1209 aa
AA seq
DB search
MMVSVGTTTYPMLVTFGGLTSLLSREPVLSHVVEDALTRRTPTLDLQVAASARPAVAAVL
GRSLDGSGRLPVLLVTSTFREAEESVATLKTWLGADAVCYYPSWETLPHERLSPRTDTVG
RRMEVLRRLCGTEGEVPQVVVAPVRSLLQPQVAGLGRVAPVRLAVGEEHDLTELATELVN
AAYSRVDMVERRGEFAVRGGIVDVFPPVLEHPVRIDFFGDEIEEMTSFAVADQRSTDETH
QELICAPCRELILTDEVRSRAKALLTDHPELADMLERIGNGQAVEGMEALMPALVDEMEL
LVDVLPEHAMVVLSDPEMVRSRAADLVRTSEEFLGAGWAAAAGGGQAPIDLAASGYRSLA
QVRSHCLERGMAWWSMSSFSLDSSATDVLVDDDITSAPQTVNPQLVAVEPWHGDVEAAVK
DLTARLDDGWTVLLCAEGEGMAKRMSELLGEHNVAARLVDDVDPDATEPCVQVIRLHQRH
GFAAESVKLLVASTGDLAESQDPGGTGERRMPRRRRNQIQPLELKPGDLIVHEQHGVGRY
VEMVQRTVGGATREYLVIEYAPSKKGQPGDRLFVPVNSLDQVTRYVGGDAPSLDRMGGGD
WRKRKARARKAVREIAAELIKLYAARQATKGHAFGPDTAWQRELEGAFAYVETPDQLTTI
ADVKRDMEQVVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFQTF
TERYAGFPVKVAALSRFQTDTEARETLEGLQRGTVDVVVGTHRLLAKEVEFKDLGLVIVD
EEQRFGVEHKEALKRMRVNVDVLAMSATPIPRTLEMAVTGIREMSTIATPPEERHPVLTF
AGPYDEGQVVAAIRRELAREGQVFYIHNRVQSIEKTAAKLRELVPEARIVTAHGQMNEKQ
LEQIMVDFWERRADVLVCTTIVESGIDISTANTLLIDRADLMGLSQLHQLRGRVGRSRER
GYAYFLYPADKPLSQTAHDRLATMAAHTDLGSGMAIAMKDLEIRGAGNLLGGEQSGHIAD
VGFDLYIRLVGDAVAEFRGDSTTADEPEMRIELPVDANLPVEYVETERLRLEMYKRLAEV
RSDEEVDAIGAELVDRYGPMPEPVQALLGVARFRLLCRQAGIHEVVPAGRNIRFSPVNLP
ESRVMRLKRLYPGSVVKQTAGLVLVPKPMTATIGGQPLGGADLLKWSADLVTNVLAVDTP
IGAGRPTEP
NT seq
3630 nt
NT seq
+upstream
nt +downstream
nt
gtgatggtgagtgtcggtaccaccacgtaccctatgttggtgacttttggcggactgacc
tcccttctttcccgcgaaccggtgctctcccatgttgtggaggacgcccttacccggcgc
actcccacccttgaccttcaggtggcagcttcggcccgcccggcggtggcagccgtactg
ggccggtctctcgacggttccggacgtctgccagtattactcgtgacgagcacgttccga
gaggccgaggaatcagttgctaccttgaagacgtggctcggcgccgacgctgtctgttac
tacccatcgtgggagaccttgcctcatgagcgtctgagcccgcgtacggacaccgtcggt
cgacgcatggaggtgctgcgtcggctgtgtggtaccgagggtgaggtaccacaggtggtg
gtcgccccggtgcgctccttgctgcagcctcaggttgccggtctgggacgcgtcgccccg
gtgcgcctggcagtgggagaagagcatgaccttaccgagctcgcgactgaactcgtcaac
gccgcctatagccgggttgacatggtggaacgccgtggcgaattcgcagtacgtggcggc
atcgtcgacgtcttcccaccggtgctagaacacccggtccgtatcgatttttttggtgac
gagatcgaggaaatgacctccttcgcggtagccgaccagcgatccaccgacgagactcac
caagaactgatctgcgctccttgccgtgagctcatcctcaccgacgaggtacgttcccga
gccaaggctttgctgaccgaccatcccgaattagctgacatgttggagcggatcggcaac
ggtcaagctgtcgaggggatggaggctcttatgccggccctcgttgatgagatggaacta
ctcgtcgacgtcttgcctgagcatgccatggtcgtcctgtcagatccagagatggtgcgc
tctcgtgctgcggatctggttcgcacctccgaagagttcctcggtgctggatgggcagct
gccgccggcggcggacaagctcctattgacctggctgcttcgggttatcgcagcttggcc
caggtaagatcgcactgtctagagcgcggcatggcctggtggtcgatgtcctctttttct
ctggattcttcggcaactgatgtcctcgtcgacgacgacatcaccagtgctccgcaaacg
gttaatccccagctcgtggccgttgagccgtggcatggcgacgtcgaggcagctgttaag
gatctgacggctcgccttgacgacggctggacggtcctgttgtgcgccgagggtgagggc
atggccaaacgcatgtccgagctgttgggggagcacaacgtcgcggccagactggttgac
gatgtcgacccggatgccaccgagccatgcgttcaggtcatccgacttcaccagcgtcat
gggttcgcggccgagtctgtcaaactgctcgttgcttccaccggtgacctcgccgagtcc
caggatcccggtggcactggcgaacgtcgcatgcctcgacgacgtcgaaatcagatccaa
cccctggagctcaagccgggcgatctcatcgtccacgagcagcacggtgtggggcggtac
gtggagatggtgcagcgcactgtcggcggcgctacccgcgagtacctcgttatcgagtac
gcgccctccaaaaaaggtcagcctggtgatcgcctcttcgtgccggtgaactcgctggat
caggtgacccgatatgtcggtggggatgcccccagcctcgaccgtatgggtgggggagac
tggcgcaagcgcaaggcgcgtgcccgcaaggcggtccgtgaaatcgccgccgagctcatc
aagctctatgctgctcgccaggccactaaggggcatgctttcggccctgacactgcgtgg
cagcgggagttggagggcgccttcgcttacgtcgagacacctgaccagctcaccaccatt
gccgacgttaagcgtgacatggagcaggtcgttccgatggaccggctggtctgtggtgat
gtcggctacggtaaaaccgagatcgcggtacgtgctgcgtttaaggcggttcaggacggc
aagcaggtggcggtgctggtgcccactactttgctggtgcagcagcatttccagaccttc
actgagcgttacgcaggtttccccgtcaaggtggcggccctgtctcgtttccagactgac
accgaagcccgcgaaaccctcgagggacttcaacgcggtaccgtcgacgtcgtcgtcggt
acccatcgcttgctggccaaggaggttgagttcaaggatctcggcttggtcatcgtcgac
gaggaacagcgttttggcgtcgagcacaaagaagcgcttaaacgcatgagggtcaacgtc
gatgtgcttgctatgagcgctacgccgatcccgcgcaccttggagatggcggtgacaggc
atccgcgagatgagtacgatcgccaccccaccagaggagcgtcacccggtgctcactttc
gccggaccctatgacgaggggcaggttgttgcggcgatccggcgtgaacttgctcgtgaa
ggtcaggtcttttacatccacaaccgcgtgcagtccattgaaaagacagctgccaagctg
cgtgaacttgttccagaagcgcggattgtcactgcgcacggccagatgaacgagaaacag
ctggaacagatcatggtggacttctgggagcgtcgtgccgacgtcctggtatgcacgacg
atcgttgagtcgggtatcgacatttctaccgccaatactctgctcatcgatcgagctgac
cttatggggctgtctcaactgcaccagttgcgtggtcgtgtggggcggtctcgggagcgt
ggctatgcctacttcttgtacccggcggacaagccactctcccaaacggctcacgaccgc
ttggcgacgatggccgctcacaccgacctgggttctggcatggccatcgccatgaaggat
ctggagattcgcggcgccgggaatctgcttggtggtgagcagtccgggcacattgctgac
gttggcttcgatctttacattcgtctggtaggtgacgccgtcgctgagttccgtggggac
agcaccactgccgatgaaccggagatgcgtattgagctgcccgttgacgccaaccttccg
gttgagtacgtcgaaactgaacgcttacgccttgagatgtacaagcgattggctgaagtg
cgcagtgacgaggaggttgacgccatcggggccgagttggtcgaccgttatggaccgatg
cccgagcccgtccaagctctgcttggggtggcgcgattccgcctgctatgtcgacaggcg
ggaattcatgaggtcgttccggctggacgcaacatcaggttttcgccggtgaatctgccg
gaatcccgggtgatgcgcctcaagaggttgtatcccggatcggtggtcaagcaaacagcg
ggtttggtgctggtgcctaaacccatgactgcaacgattgggggccagccattgggcggt
gccgacttgttgaagtggagtgccgacctcgtgacgaacgtcctggctgttgacaccccg
atcggcgcgggccggcccactgagccatag
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