Prunus avium (sweet cherry): 110758046
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Entry
110758046 CDS
T05161
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42 isoform X1
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
pavi
Prunus avium (sweet cherry)
Pathway
pavi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110758046
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pavi03041
]
110758046
Enzymes [BR:
pavi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110758046
Spliceosome [BR:
pavi03041
]
Complex A
U2 snRNP components
U2 related factors
110758046
Complex B
110758046
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
FeoA
Motif
Other DBs
NCBI-GeneID:
110758046
NCBI-ProteinID:
XP_021815521
UniProt:
A0A6P5SMR3
LinkDB
All DBs
Position
Unknown
AA seq
1161 aa
AA seq
DB search
MEEGKHKSRKEGESKRSHRDRQREKERNGERHRDKDKDKDKRDRDSRRSEREKSSDSEDR
YDREKHRDRDTDRTRSRDDERERTRDRKREKDKEKEKEKEKERERAREKEKERERERERE
KERDREKEKEREKEKERERERERREREREGEDREREKRERDREREKDRDRERRIRERERR
RDIDTDDTDDDVRERGRKRHRKDENEYKEKERERSSSRSNRHRDDGDGSPRKKSDEDDSV
KKEKQPTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESEREKRGEGDVDEPKSGK
AWTLEGESDDEEVPSLGKSERDMDVDGEDNLTDREVGGDAMVVDSENETDAPTLQNGADD
AVGDEEVDPLDAFMNSMVLPEVEKLNNAVEPSIVDEKNKDKKDDLSNGEQPRRGSNKSMG
RIIPGEDSDSDYGDLENDDDPLEDEGDDEFIKRVKKTKAEKLSVVDHSKIDYDPFRKNFY
IEVKEISRMTPEQVGAYRKELELKIHGKDVPKPIKMWHQTGLTSKILETIKKLNYEKPMP
IQAQAVPVIMSGRDCIGIAKTGSGKTVAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTREL
VQQIHSDIKKFTKVLGLRCVPVYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSGGRI
TNLRRVTYLVVDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEVLARKVLNK
PVEIQVGGRSVVNKDIAQLVEVRLENERFLRLLELLGEWYEKGKILIFVESQNKCDALFR
DLLRHGYPCLSLHGGKDQTDRESTITDFKSNVCNLLIATSVAARGLDVKELELVINFDSP
NHYEDYVHRVGRTGRAGRKGCAITFVSEEDARYAPDLVKALELSEQVVPDDLKSLADGFT
AKVNQGLEQAHGTGYGGSGFKFNEEEDEVRRAAKKAQAKEYGFEDDKSDSEDEDEGIRKA
GGDISQQAALAQIAAIAAASKGSTASMQTPVPAAQLLPNSGLPVSLPGVLGLTLPGTAAA
VAGTGLPVVGNDGAARAAAIAAAMNLQHNLAKIQADAMPEHYEAELEINDFPQNARWKVT
HKETLGPISEWTGAAITTRGQYFPPGKVAGPGDRKLYLFIEGPTEQSVKRAKAELKRVLE
DISNQALSLPGGAQQGRYQVL
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atggaagagggcaagcataaatccaggaaggagggggaatccaagaggagtcatcgagat
cggcaacgtgaaaaagagaggaatggagagagacacagggataaagataaagataaagat
aagagagaccgtgatagtcggcgctctgagagagaaaagagttctgattctgaggatagg
tatgatagagagaagcatcgagacagggacactgataggacacgaagccgggatgatgaa
agagagagaacgagagacaggaagagagaaaaagataaagagaaggagaaggagaaggag
aaggagagagagagggctagagagaaggaaaaggagagggaaagagaaagagaaagagaa
aaagaaagagatagagagaaagaaaaagaaagagaaaaagaaaaggaacgagaaagagag
agggagagaagggaacgagaaagagaaggagaagatagagagagggaaaagagggagcga
gatagggagagggaaaaggacagagatcgagagaggaggatacgggagagggagaggcgc
agggacattgatactgatgatactgatgatgatgttagggagcgtggtaggaagcggcat
aggaaagatgaaaatgagtacaaggagaaagagagggaaaggagtagcagcaggtcaaac
agacatagggatgatggagatgggagcccgagaaagaagagtgatgaagatgattcagtt
aagaaagagaagcagccaactcgtgaggaggagttagaggatgaacagcggaaattggat
gaggaaatggaaaagcggagaaggagagttcaggagtggcaagagttaaaaaggaagaag
gaagaatctgagagagagaaacgtggggaaggggatgttgatgaacctaagtccggcaag
gcctggactcttgaaggagaatctgatgatgaagaagtaccctcattagggaaatcagag
agggatatggatgttgatggagaagacaatcttactgacagagaagttggcggagatgct
atggtggtagattctgagaatgaaacagatgcacctactttgcagaatggggctgatgat
gctgttggtgatgaagaagttgatccattagatgcttttatgaattctatggtattgcct
gaagttgagaagctgaacaatgctgtggaaccatcaattgttgatgagaagaacaaggat
aaaaaggatgatctaagtaatggtgaacagccaaggagaggttcaaataaatctatgggc
agaataattcctggggaggattctgactcggattatggggaccttgagaatgatgatgac
cccctagaagatgaaggtgatgatgagttcataaaaagggtgaaaaagacaaaagctgag
aagctttctgtagttgatcactctaagatagattatgatccattccgcaaaaatttctat
attgaggtgaaggagatctctagaatgactccagaacaggtgggtgcatatcggaaagaa
ttggaattgaagatacacggtaaggatgtgccaaagccgatcaagatgtggcaccaaact
gggcttacaagtaaaatcttggaaacaataaagaagctaaactatgaaaagccaatgcca
attcaggctcaggcagtgcctgtaattatgagtggtcgagattgtattggcattgcaaaa
actgggtcaggcaaaactgttgcattcgtgctgccaatgctgaggcatatcaaggaccag
ccacctgtggtagcaggagatggacctattgggcttataatggcaccaactagggagctt
gttcagcagattcacagtgatattaaaaagtttaccaaggtactgggtctcaggtgtgtg
cctgtgtatggaggttctggtgttgcccaacaaattagtgaattgaagaggggagctgaa
attgttgtctgtactcccggtaggatgattgacatactttgtacaagtggagggagaata
acaaatctgcgtagagtaacgtatttggttgtggatgaagctgatcgaatgtttgacatg
ggttttgaacctcaaatcactcgaattgttcaaaatattcggccagatcgtcaaactgta
ttgttttctgccactttccctcgccaggttgaagtcttggcacggaaagtcttgaacaaa
cctgtggaaatacaagttggtggtaggagtgttgtgaataaggacatagcacaattggtt
gaagtgaggctggaaaatgaaaggttcttgagattgttagagttacttggggagtggtat
gagaaaggaaaaattttgatatttgtcgagtcacagaataaatgtgatgctttatttagg
gatctgcttaggcatggatatccttgtctctcacttcacgggggcaaagatcaaacagat
cgtgagtccaccataactgattttaaaagcaatgtttgtaatttgttgattgcaactagt
gttgctgcaagagggttagatgtcaaggagcttgaactggtgatcaactttgatagtcca
aatcactatgaagactatgttcaccgtgttggccgtacagggcgagctggtcggaaaggc
tgtgctataacgtttgtctctgaggaagatgctagatacgctccagatcttgtcaaagca
ttggaactctctgagcaagttgttccagatgacctgaaatctcttgcggatggtttcacc
gcaaaagtaaatcagggactcgagcaagcccatggaactggttatggaggaagtggtttt
aaatttaatgaagaggaagatgaagtgaggagagcagcaaagaaggcacaagccaaagaa
tatggttttgaggatgacaagtcagattcagaagatgaagatgaaggtatccgaaaggca
gggggagacatttcacagcaggctgcccttgctcagatagcagccattgctgccgcctct
aaaggtagtacagcttcaatgcagacccctgtgcctgctgcccaactgcttcccaacagt
ggactgcctgtttctcttccaggtgtccttggtctaacattaccaggaacagcagcagct
gtggctgggactggtttgcctgttgttggcaatgatggggcagctcgggctgcagcaatt
gcagctgcaatgaacttgcagcataatctggcaaagatccaagctgatgcaatgcctgaa
cactatgaagcagagttggagataaatgattttccacagaatgctcgatggaaggttacc
cacaaggaaactttgggacctatatcagagtggactggagctgccattactacgaggggt
cagtatttcccaccaggcaaggttgcaggaccaggagatcgcaaactctacttgtttatt
gagggccctactgaacaatctgtcaagagagccaaagcagaattaaaacgtgttttggaa
gacatctcaaatcaggcattatcacttcctggtggagctcagcaaggcagatatcaagtt
ctataa
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