Prunus avium (sweet cherry): 110758437
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Entry
110758437 CDS
T05161
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pavi
Prunus avium (sweet cherry)
Pathway
pavi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
110758437
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pavi03400
]
110758437
Enzymes [BR:
pavi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
110758437
DNA repair and recombination proteins [BR:
pavi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
110758437
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
110758437
NCBI-ProteinID:
XP_021815993
UniProt:
A0A6P5SQM1
LinkDB
All DBs
Position
Unknown
AA seq
1163 aa
AA seq
DB search
MSEETKFSVLCSLFNWMQRSKTSTLKRSKFRKFLDTFCKPADYFDSIRLILPSLDRERGS
YGLKESVLATCLIDALGMARDSEDALRLINWRKGGAKTGVNAGNFSLVAAEVLQRRQGVS
SGGLTIKELNDLLDRLASSENRAEKTSVLSTLIKKTNAQEMKWIVMIILKDLKLGTSEKS
IFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAMRVGDATIAWK
KLHGKEVLVECKFDGDRIQIHKNGTEIHYFSRNFLDHPEYGHAMSDIVIQNVLADRCILD
GEMLVWDTSSNRFAEFGSNQEIAKAARDGLDSDRQLCYVAFDILYGGDTSVIHQSLKERH
ELLQKVVKPLKGRLEILVPNGGLNTHRSEGEPCWSLIARSVDDVERFFKETIENRDEGIV
LKDLGSKWEPSDRSGKWLKLKPDYIRAGSDLDVLIIGGYYGSGRRGGEVAQFLVGLAERP
VPNTYPRRFVSFCRVGTGLSDEDLEAVATKLKPYLRKYEYPKKAPPSFYQVTNNSKERPD
VWVESPEKSIILSITSDIRTIRSEVFSAPYSLRFPRIDRVRYDKPWHECLDVESFIELVH
SSNGTTQRGTDYGALQDTKTKHKKSSRKEEKRNLSVVPSHLVQTDVSSIKEDTLLFSKMM
FYFVNVPPTNSLDSLHKLVVENGGTFSMNLNNAVTHCVAADSKGIKYQAAKRHGDIIHFS
WVLDCCSQKRLLALQPKYYLFISESSKKKLQEEIDEFSDSYYWDLDLADIKQLLSNMYGS
EDSKTIDHYKKKYCPMEKWSRFHGCCIYFNPSTHSLKPDWEVLLRFTLRRLKIQVLLSGG
RVTDSIAHATHLVVLSVQGLDVDFETLLQSFTESEKRFLHNKKLHIVGSQWLEDCLERDQ
RLQEETYSLKPNGLEEFSIEEWKNDMDPEEAPSDVDTLQINNSSSSPNQEGKEIGGKEAP
ENYRILASPERESKRKRGRPALTSMNKGKTGVNQAWRTRVRIGRKPAKISGNESDEGGPH
DNTLLAEEVDKEERKHGMMSDASLNIQENEAIKDSESLQRENAAVQEVAEGIWFEDHSYQ
IPDVEMIEKCNIENSGKPEKLEVMADPVQAMFFDMIPSLAMKKVETTNTSIEKEKPAVDL
NAGPSKKKKVSYKDVAGELLKDW
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaggagaccaagttcagcgtcctatgcagcctcttcaactggatgcaaagaagc
aaaacctcaaccctaaagcgctccaaattccgcaaatttctcgacactttctgtaaacct
gctgattatttcgattcgattcgcctaattcttcccagcctcgaccgcgagcgcggcagc
tatggccttaaggagtctgtgctcgccacctgcctcattgacgctctcggcatggccaga
gactccgaggacgctcttcgcctcatcaattggcgcaagggcggcgccaagactggtgtc
aatgccggcaacttctcgctcgtggccgccgaggtgctgcaacgtagacaaggagtgagt
tcaggtggattaacaatcaaggagttaaatgacttgcttgatcgtttagcttcaagtgaa
aatagggcagagaagacttcagttctgtctacgttgataaagaagacaaatgcacaggaa
atgaagtggattgtcatgattattcttaaagatctgaagctgggaactagtgaaaagagc
atttttcatgaatttcatccagatgctgaagacttgtttaatgtcacatgtgacttgaaa
ttggtttgtgaaaagctgagggatagaaatcagcgtcataaacgccaggacattgaagtt
ggaaaagctgtacgcccacaactagctatgagagttggtgatgcaactattgcatggaaa
aagcttcatggtaaggaagtgttggttgagtgtaaatttgatggggatcgcatccaaatt
cataagaacggaactgaaatacattacttctcaaggaattttcttgatcaccctgaatat
ggacatgcaatgtcagacattgttatacaaaatgttctggctgataggtgtattcttgat
ggtgagatgttggtctgggacacatcttccaatcgttttgctgagtttggttcaaatcaa
gaaatagccaaggcagcaagggatggacttgacagtgatagacagttgtgctatgttgca
ttcgatatcctctatggtggagatactagtgtaattcaccagagcttgaaggaacggcat
gagcttctccagaaagttgtgaaacctttgaagggtcgtttagaaattttagtacctaat
ggtggtcttaacactcaccgttctgaaggggaaccttgttggtcgcttattgctcgtagt
gtggatgatgtcgagaggtttttcaaagaaaccatcgaaaatagagatgaggggattgtt
ttgaaggaccttggttctaaatgggaacctagtgatcggagtggaaagtggttaaaatta
aagccagattacattcgtgcaggctctgatttggatgttcttatcataggcggatactac
ggttctggacgtcgtggaggggaggtagctcaattcttggtgggtcttgctgaacgtcca
gtaccaaatacatatcctagaagatttgtatccttttgcagagtgggcactggactttct
gatgaggatctagaagctgttgcaaccaaattaaagccttatttgaggaaatatgagtac
ccaaaaaaggctccaccaagtttttatcaagtaacaaacaattcaaaagagagaccagat
gtttgggttgaaagccccgagaaatcaataatactttctataacgagtgacatcagaact
ataaggtctgaggttttttctgcaccatacagcctgagatttccacgtattgatcgagtt
agatatgataaaccttggcatgaatgtcttgatgtggaatcgtttatagagcttgtacat
tctagcaatgggaccacacaaaggggaacggattacggtgctctgcaggatactaaaacg
aaacacaagaaatcctctagaaaggaagaaaaaagaaatctttctgttgttccctctcat
ttagttcagactgatgtttccagcatcaaggaggacacattactattttcaaaaatgatg
ttttactttgttaatgtgcctcccactaattctcttgattccttgcacaaacttgttgtt
gagaatgggggtactttctctatgaatttgaataacgcagttacacactgtgttgcagct
gatagcaaagggattaaatatcaggcagcaaagcgtcatggagatataattcatttctca
tgggtattggattgttgttctcaaaagagacttcttgctttacagccaaagtactatctc
ttcatatctgaatcttcaaaaaagaagttacaagaagaaattgatgaattttctgactcg
tactactgggatcttgaccttgcagacatcaagcagcttttaagcaacatgtatggatcc
gaggattccaaaactatcgaccattacaagaaaaaatactgtccaatggagaaatggtct
cgctttcacggctgctgcatttactttaacccatcaactcattccttgaaaccggattgg
gaagtccttttacgattcacactcagaaggttgaagattcaagttctcctaagtggtggc
agagtcactgacagtattgctcatgcgactcatttggtagtcttgtcagtgcagggtctt
gatgtcgatttcgaaactttattgcaaagtttcactgaatcagagaaacgatttctgcat
aacaaaaagttgcatatcgttggatctcaatggttggaagactgcttggaaagggaccag
agactgcaagaagaaacatatagcttaaaacccaatgggttggaagaattcagcattgaa
gagtggaaaaatgacatggatccagaagaagcaccctctgatgtggacactctgcaaatc
aacaattcttcttcttctcctaaccaagaaggaaaagagataggaggcaaagaagctcca
gaaaactataggatcttggcctcacctgagagggaaagcaaaaggaaaagaggaagacct
gctctcacaagcatgaacaaaggaaaaactggtgtcaaccaagcttggagaacacgggtg
cgcattggaaggaagcctgctaaaatatcaggaaatgagtcagatgaaggtggccctcat
gataacacattacttgcggaagaggttgataaggaagaaaggaaacatggaatgatgagt
gacgcaagtttaaacatccaagaaaatgaagcaattaaagattctgaatcattacaaaga
gaaaatgcagctgtgcaagaggttgctgaaggcatttggtttgaggaccattcctatcaa
attcctgatgtcgaaatgattgagaagtgtaatatcgaaaacagtggaaagccggagaaa
cttgaagttatggctgatcctgttcaagccatgttttttgacatgattccaagtcttgct
atgaagaaagttgaaactacaaatacgagtattgaaaaggaaaaaccagcagtagatctg
aatgcaggaccttcaaagaaaaagaaagttagctacaaggatgttgctggtgagctgctc
aaggattggtaa
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integrated database retrieval system
