Prunus avium (sweet cherry): 110769604
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Entry
110769604 CDS
T05161
Name
(RefSeq) tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
pavi
Prunus avium (sweet cherry)
Pathway
pavi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110769604
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pavi03019
]
110769604
Messenger RNA biogenesis [BR:
pavi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
110769604
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_1
TPR_17
TPR_2
TPR_11
TPR_16
TPR_14
TPR_19
TPR_8
TPR_12
TPR_9
TPR_20
TPR_7
BTAD
TPR_15
TPR_10
Motif
Other DBs
NCBI-GeneID:
110769604
NCBI-ProteinID:
XP_021829314
UniProt:
A0A6P5TQS8
LinkDB
All DBs
Position
Unknown
AA seq
1179 aa
AA seq
DB search
MQETEQEKECELRRLEECIEAHPDDPSLRFELGVLLWEEWDAKEKAAEQFVVAAKLKPEI
EKGGAFRYLGIYYAGLDSQSHSQRALKCFQKAVSLNPDDSLSGEALCDLLDQQGKESLEV
AVCREASQKSPRAFWAFQRLGYLLLHQNKCSEAVHSLQHAIRGYPTSPHLWEALGLAYQR
LGRFTAALKSYGRAIELEGTRIFALLESGNIFLMLGSFRKGVEAFQQALEISPKSVSAHY
GLASGLLCLAKECNNLGAYRWGATVLEEASKVAWMCTQLAGNMSSIWKLHGDIQLTYAKC
YPWMEEDHSLEFDVEAFDNSILSWKRTCCLAAKTARCSYQRALRLSPWQANIYADIAVTS
DLVDSFDNSTGHELSAWQPSEKMALGALLLEGDNSEFWVALGCLSDHNALKQHALIRGLH
LNVSLAVAWAYLGKLYRKQGEKQFARQAFDCARSIDPSLALPWAGMSADFHARESAAGEA
YESCLRAVQILPLAEFQMGLAKLALGSGNLSSSQVFGAIRQAMQRAPHYPECHNLTGLVY
EAQSNYQSAAASYRLARCAITNLSGSGRKSHMTDISVNLARSLSRAGNALDALQECEDLK
KEGLLDVEGLQIYAFSLWQLGKTELALSVARNLAVSVSTMEQTSAAASVVFICRFLYHIS
GLDSAINSILKMPKQLFQSSKISFIVSAIHALDRSNRLESVVSSSRYYLKSHEEITGMHF
LIALGKLIKHGSEHRLGYQSGIDHLRKALHMYPNSSLLRNLLGYLLLCSEEWNDTHIATR
CCDIDTTNPSKGGLKSAYEILGAGAVACYAVGNCSPKFSYPTCTYQCLNEPGAIQLLQKC
LRREPWNQNIRYLLVLNLLQKAREERFPCHLCIILERLISVALSDEVYHNTGMSYEYKKF
QLLLCASEICLQGGNLTGCINHAKNASSIMLPDDYIFFAHLLLLRAYALECDTVNLQKEY
IRCLELKTDHHIGWICLKFIEYRYELQSDLDILESSFKECSKERMNSWNMWRALFSLVQG
LISILSQDIISAEQFFAQACSLAGAESSLLLCHGATCMELSRQGCLQFLSLAVRSLTKAQ
EGPLVPLPIVSALLAQAAGSLGSKEKWEKNLRLEWPTWPQEMRPAELFFQMHLLARQSKA
SSDSSRVEFCQSPEKWVLRAIHTNPSCMRYWKVLQKLVE
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaaacggaacaagaaaaggaatgtgagctgcgacgtttggaggagtgtatagag
gcccatccagatgatccctcccttcgcttcgaactcggagtgttgttgtgggaggagtgg
gatgccaaggaaaaagcggcagaacaattcgtagtagcagcgaaattgaagcctgagatt
gagaagggaggggcattcagatatctagggatttattacgcaggtctagactcccagtcc
catagccagagagctcttaagtgcttccagaaagccgtctctctcaatcctgatgactcc
ctctctggggaagccttgtgtgatttgttggaccagcaaggaaaggagagcttggaggtg
gctgtgtgccgggaggcttcccaaaaatcccccagggccttttgggcttttcaaagactc
ggttacttgctactccatcaaaataaatgctctgaagctgtccacagtcttcaacatgcc
attcgaggctatcctacctctccacatctctgggaggctcttggccttgcctaccagcga
ctaggcaggttcactgctgctctcaagtcttatggaagagccattgaattggagggtaca
agaatctttgctttgcttgaaagcggaaacatctttttgatgcttggttcctttcgaaag
ggagttgaggcatttcagcaagcattagagatttctcccaaaagtgtctctgcgcactat
gggcttgcttctgggctgctgtgtttggcaaaggaatgcaataatttgggagcatataga
tggggtgctacagtgctagaggaggcatctaaagttgcctggatgtgtactcaattagct
ggaaatatgtcatctatttggaagctgcatggtgatatacaacttacttatgcaaaatgt
tatccatggatggaggaggaccacagtttagaatttgatgtggaagcctttgataattcc
atcctttcatggaagcgtacctgctgtttggctgcgaaaaccgccaggtgctcttatcag
cgagccttgcgcttatccccatggcaagctaatatatatgctgacattgcagtaacttca
gatctcgtagactcttttgataacagtactggacatgaattaagtgcttggcagccatcc
gagaagatggctttgggagccctgttacttgagggtgacaattctgagttttgggtagca
ttgggatgtttgtctgatcataatgcattgaaacaacatgctctaatcaggggattgcat
ttgaatgtatctctagctgttgcgtgggcatacttagggaagctgtacagaaaacaaggt
gagaagcaatttgcaaggcaagcatttgattgtgctagaagtatagatccttcactcgcg
ttaccatgggcaggcatgtcagctgattttcatgctagagagtctgcagctggagaagct
tatgagagctgcttacgagctgtgcagatattgcctcttgccgaattccaaatgggtctt
gcaaaacttgctcttggttcagggaatctttcatcttcgcaggtctttggagccatcaga
caggccatgcagcgtgcacctcactatcctgaatgccataatttaactgggctagtctat
gaggcacaatccaattatcagtctgccgccgcttcttatagactagcacgctgtgcaatc
accaatttgtcaggcagtggtagaaaatctcatatgacggatatatcagtcaatttggcc
cgatcacttagtagggcagggaatgctctagatgctttgcaggaatgtgaagatttgaag
aaagaagggttgcttgatgtggagggtttgcaaatatatgctttctccttgtggcaactt
ggtaagactgaactggccctctctgtggcaagaaatctggcagtgagcgtctctacaatg
gaacaaacatctgcagctgcctctgttgtttttatctgtagattcctgtatcatatttct
ggactggattcggcaatcaatagcattctgaagatgccaaagcaactgtttcagagttca
aagatcagtttcatagtatctgctattcatgctctagatcgaagtaatcggcttgagtct
gttgtgtcaagcagccgttactatcttaaatctcatgaagagataactggaatgcacttt
ttgatagcacttggtaaactaataaaacatggatcagaacaccgtttgggatatcaaagt
ggaattgatcaccttaggaaagctcttcacatgtatcctaacagtagcttgttaaggaac
cttcttggttatcttttgttgtgcagtgaagaatggaatgatacccacattgcaactagg
tgttgcgacatagacactactaatccaagtaaaggcggtttaaaatcagcatatgaaatt
cttggtgctggagcagtcgcttgctatgctgttggcaattgcagtcctaagttctcttac
ccaacatgcacataccagtgcctgaatgaacctggagccatccagctgctacagaaatgt
ttacgccgagaaccatggaaccagaacataagatatctgcttgttctcaatttactgcag
aaggcacgtgaagagagatttccttgccatctttgtattatacttgagcggctaataagt
gtagctctttctgatgaagtttatcataatacgggcatgtcttatgaatataagaaattc
cagcttttactttgtgcttctgagatctgtttgcaaggtggtaatctgactggctgtatc
aaccatgccaaaaacgcttcatcgattatgcttcctgatgattatattttctttgcacac
ttgctattactccgtgcctatgccttagaatgtgacactgtaaaccttcaaaaagagtat
ataagatgcttggagctcaagacagatcatcatattggttggatatgtctaaagttcatc
gaatatcgttatgaattgcaaagtgatttggatattttagagtctagcttcaaagaatgc
tcaaaggagcggatgaattcatggaatatgtggagggctctattcagtctggtgcaaggc
ttgatatctatattgagccaggacattatttctgctgaacagttttttgcacaagcttgt
tcattggcgggtgctgagagcagcctcctgctttgtcatggtgccacctgtatggagctt
tctcgccaggggtgtttgcagtttttatcacttgctgtacggagtctcactaaagctcaa
gaaggtcctcttgttcccttaccgattgtctcagcattgctagctcaagcagctggaagt
cttggttcaaaagagaagtgggagaaaaacctccgtcttgaatggcctacttggcctcaa
gaaatgaggcctgcagagctgttctttcagatgcatttgcttgcaagacagtcgaaagct
agttcagactcttccagagttgagttttgtcagagtccggagaagtgggttcttcgagcg
attcacacaaacccttcttgtatgagatattggaaggttttgcagaagctcgtggaatga
DBGET
integrated database retrieval system
