Prunus avium (sweet cherry): 110771219
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Entry
110771219 CDS
T05161
Name
(RefSeq) regulator of nonsense transcripts UPF3 isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
pavi
Prunus avium (sweet cherry)
Pathway
pavi03013
Nucleocytoplasmic transport
pavi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110771219
03015 mRNA surveillance pathway
110771219
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pavi03019
]
110771219
Messenger RNA biogenesis [BR:
pavi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
110771219
mRNA cycle factors
P-body specific factors
110771219
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
110771219
NCBI-ProteinID:
XP_021831171
UniProt:
A0A6P5TVY0
LinkDB
All DBs
Position
Unknown
AA seq
529 aa
AA seq
DB search
MKDPLVRTKVLVRHLPPSLSHSDLLQQIDHQLADRYNWFCFRPGKNSQKNQRYSRAYIDF
KRPEDVFEFAEFFDGHVFVNEKGSQFKAIVEYAPSQRVPKPCTKKDGREGTIYKDPDYLE
FLKHIAKPVEHLPSAEIQLERKEAEQAGGAKEPPIVTPLMEYVRQKRAIGSGTQVSSVVR
KVRRRAGAASLNKRGSTSTKRVSEKKKYILKDSAKHTSRKDKSTFTVVPRREDQLASSSG
KETLENEIGSVSGIPVIADSGKKKILLLKGKEREIPSASEGMLPQGSVTSVGSSVSTAPK
QNQRREAGGKLIRSILLNNEGRQSQSSTEIQPQQKILSLNSDVKRASRPSNARLGLNGQV
SNNEPNSMSSEGDRKRAAVDKFSKKDLHGTTNVSEKQEKHTRNKDRPDRGVWAPLRRADS
SHASDEHLPSVPQRPQLLSDSFEVSHGEVKDCTSYGSRTGEVINPTSGRSSSHVENGSQR
HFGRRGSAHNIKDDGSINVSEGKPSKRGATVHGAPEQKQVWVQKSSSGS
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atgaaggacccattggtgaggacgaaggtgttagttcggcacttgcctccgtctctgtct
cactccgatctccttcagcaaatcgaccatcaactcgctgaccgctacaactggttttgc
ttccgtccgggaaagaacagccagaagaatcagaggtactctcgagcctacatagacttc
aagcggcctgaagatgttttcgagtttgctgaattctttgatggacatgtgtttgttaat
gagaaggggtctcagttcaaggctatagttgaatatgcaccctcacagcgtgttccaaaa
ccatgtaccaaaaaggatggccgtgaagggactatatataaagatcctgattatttggag
ttcctaaaacatattgcgaagcctgttgagcatcttcctagtgcagaaatacagctggaa
agaaaggaagcagaacaagctggtggtgcaaaagagcctcctattgttacccccctcatg
gagtatgttcgtcagaaacgagctattggaagtgggacccaggtttcatcagttgttcgg
aaggttagaagaagagcaggggctgcatctcttaacaaacgtggctcaacttctacaaaa
cgggtctctgagaagaaaaagtacatattaaaggacagtgctaaacatacaagtcgaaaa
gacaagtcaactttcactgtggtccccaggcgagaggatcaattggccagttcaagtgga
aaagaaaccttagaaaatgaaattggttctgtttcgggaatccctgtgattgcagactct
ggaaagaagaaaatcctactccttaaaggaaaagagcgtgaaataccttctgcttctgaa
ggtatgctaccacaggggagtgtaacatccgttggaagttctgtttcaactgctccaaag
cagaaccaaaggcgtgaggctggtggaaagttgatcagaagcatacttttaaataatgag
ggacgccaaagtcaaagttcaaccgaaattcagcctcagcagaaaattctaagtctgaac
tcagacgttaagcgggcgtctcggccctccaatgcaaggttagggttgaatggtcaagtc
tctaataatgagcctaactcaatgagctctgaaggggatagaaagagggctgcagttgat
aaattttcaaagaaggacctgcatggtaccactaatgttagtgagaagcaagaaaaacat
acaagaaacaaggatagacctgatcgtggtgtttgggctcctcttcgtcgtgctgatagt
tcacatgctagtgatgagcatttgccatccgtaccacaacgtcctcaactgctctctgat
tcctttgaagtttcccatggagaagtgaaggattgtacctcttatggaagcaggactggg
gaagttataaatcctacaagtggacgtagtagttctcatgtagagaatggttcacaaaga
cattttggtcgccgtggaagtgcccataatataaaagatgatggttctataaatgtaagt
gagggaaagccatctaaaagaggtgctactgttcatggtgcccctgagcagaaacaagtg
tgggttcaaaaatcatcttcaggttcttag
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