Prunus avium (sweet cherry): 110771269
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Entry
110771269 CDS
T05161
Name
(RefSeq) general transcription factor IIH subunit 2-like
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
pavi
Prunus avium (sweet cherry)
Pathway
pavi03022
Basal transcription factors
pavi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
110771269
09124 Replication and repair
03420 Nucleotide excision repair
110771269
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pavi03021
]
110771269
03400 DNA repair and recombination proteins [BR:
pavi03400
]
110771269
Transcription machinery [BR:
pavi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
110771269
DNA repair and recombination proteins [BR:
pavi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
110771269
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
VWA
IBR
Tfb4
Motif
Other DBs
NCBI-GeneID:
110771269
NCBI-ProteinID:
XP_021831233
UniProt:
A0A6P5TTY6
LinkDB
All DBs
Position
Unknown
AA seq
420 aa
AA seq
DB search
MNNGEQRRLNGEAEEDEDEDDANNGGLAAWERAYADERSWESLQEDESGLLQPIDNQTLK
HAQYRRRLRAASTARIQKGLIRYLYIVIDLSKAAAEMDFRPSRMGVVAKHVEAFIREFFY
QNPLSQVGLVTIKDGVAHCLTDLGGSPNSHVQALMGKLECSGDSSLQNALDLVHGYLEQI
PSYGHREVLILYSALSTCDPGDIMETIQKCKKSKIRCSVIGLSAEIFICKHLCQETGGLY
YIALDEPHLRELILEHAPPPPAIADFAIANLIKMGFPQRAVEGSVAICSCHKEAKVGGGY
TCPRCKARVCDLPTECRICGLTLISSPHLARSYHHLFPIVPFDEVSLSLLIDQQNKFPRA
CFGCQQSLLNPGNKPSLRVACPKCKHHFCLDCDIYIHESLHNCPGCEGARHSKIPNSNKG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacggcgagcaaagacgcttaaatggagaggcagaggaagacgaagacgaagac
gatgcaaacaatggaggcctcgctgcttgggaacgagcctacgctgatgagaggtcatgg
gagtcactgcaagaggacgagtctgggcttcttcagcccattgacaaccagacccttaaa
catgcacagtaccgtcgtcgccttcgtgctgcctccactgctcgaattcaaaagggtctt
attcgttatctttacattgttatcgacctctctaaggctgctgcggaaatggattttcga
ccaagccgaatgggcgtggttgcaaaacatgttgaggctttcattagagagtttttttac
cagaatccgcttagtcaagttggcctggtgactataaaagacggtgttgcccattgctta
acggatcttggtggcagtcccaattctcatgttcaagctttgatgggtaagctggaatgc
tcaggtgactcgtccctacagaacgcattggatcttgtacatgggtatctggaacagatt
ccatcatatggtcatagagaagttctaatcttgtattcagctctcagtacctgtgatcca
ggagatataatggaaactatccagaaatgtaagaaatccaaaattaggtgctcagttatt
ggtctctcagcagaaattttcatatgcaaacatctatgccaggaaactggtggcttgtac
tatattgcattggatgagccacacttaagagagttaatcttggaacatgcacctccacca
ccagcaatagcagactttgcaattgctaatttgataaagatgggcttcccacaaagagcg
gtagagggctctgtggcaatttgttcatgtcacaaggaggcaaaggtcggaggtggatac
acttgtccaaggtgcaaggcacgtgtatgtgacctacctactgaatgtcgcatttgtggg
ttgacgctcatttcttctcctcatttggcaaggtcttatcatcatcttttccccattgtg
ccatttgatgaggtctctctgtcactactaattgatcaacaaaacaagtttcctagagct
tgttttggctgccaacagagtcttctcaatcccggaaacaaacccagccttcgtgttgct
tgtccaaaatgcaaacatcacttctgccttgattgtgacatttatattcatgaaagcttg
cataactgcccaggttgtgagggcgctaggcattccaagataccaaattctaacaaagga
tga
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integrated database retrieval system
