Pseudomonas avellanae: BKM03_26680
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Entry
BKM03_26680 CDS
T05369
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pavl
Pseudomonas avellanae
Pathway
pavl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pavl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BKM03_26680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pavl03019
]
BKM03_26680
Enzymes [BR:
pavl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BKM03_26680
Messenger RNA biogenesis [BR:
pavl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BKM03_26680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AVB22391
UniProt:
A0A6H3CXF9
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All DBs
Position
5582058..5583947
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AA seq
629 aa
AA seq
DB search
MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN
PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLL
AHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDV
RIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIADGDLMGFDITAVEAEKPEVRERPDVRNSRGARPARADGDKNNGGRRD
KGKDKGKDKPAAAAATGERPARPPREKKPREGTPRSEQRAVQPSTPRQASDRAPDEFRDD
EVDNFGNRADYVSPYQGKGQNRGRRPAAAPGAAPAAGGAARPANPGRPAGGAPRTGSGTG
APKRNGSGSSTPRSRDSQPRGRRPAREDQPLPREGQEPAVRAPRDGQPQPKIVHKESKID
RFPSAEQLDQLPARPRGEKPALLTRNRDS
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtccgcgccatcgaggcagcgggc
tacacccagcctaccccagtgcaacagcgggccatccccgccgtgttgcaaggtcgcgac
ctgatggttgcggcacagaccggtacgggtaaaaccggtggtttcgccctccctattctg
gagcggctgtttcccaatggtgttccggacaaatcccagcgtcacggcccgcgccaaccc
cgcgtactggtcctgaccccgactcgcgaactggccgcgcaggtgcacgagagcttcaag
ctctatgcccgcgacctcaagttcgtcagcgcctgcatcttcggcggcgtcggcatgaac
ccacaggttcaggccatgtcccgtggtgtagacgtactggtggcctgccctggccgcctg
ctcgatctggccggtcaaggcagcgtcgatctgtcccacgtcgaaatcctggtgctcgat
gaagcagaccggatgctcgacatgggcttcgtccatgacgtcaaaaaggtcctggcgcgt
ttgccggccaaacgtcagaacctgctgttctcggcgaccttctccaatgacatcacgtcc
ctggccggcaagctgctgcacaacccggagcgcatcgaagtcacgccgccgaacaccacg
gtcgagcgcatcgagcaacgggttttccgtctggccgccaaccacaagcgttcgctgctg
gcgcatctgattaccgtgggcgcctgggaacaggtgctggtgttcacgcgtaccaagcac
ggtgccaaccgtctggccgagtacctggacaaacacggccttgcggcggtggcgatccac
ggcaacaagagccagaacgcacgtaccaaggcgctggccgatttcaaggccggtgatgtg
cgcatcatggtggctaccgatatcgccgcgcgcggtctggatatcgatcagttgccgcat
gtcgtcaacttcgagctgcctaacgtcgatgaagactacgtgcaccgtatcggtcgtacc
ggccgtgcaggtcgttccggcgaagcgatctcgctggttgcaccggatgaagagaagctg
ctcaaaagtatcgagcgcatgaccaaacagaagattgccgacggcgatctgatgggcttt
gacatcactgcagtcgaggccgagaagcctgaagtgcgtgagcgtcccgatgttcgcaac
tcgcgcggcgcacgccctgcgcgtgccgatggcgacaagaacaacggtggtcgtcgcgac
aagggcaaggataaaggcaaggacaaacctgccgctgcagctgccacaggcgaacgccct
gcccggccgccacgcgaaaaaaagccccgtgagggcacgcctcgtagcgaacagcgtgca
gtgcagccttccacaccgcgtcaggcatcagatcgtgccccggatgagtttcgcgatgac
gaagtcgataacttcggcaatcgtgctgactatgtaagcccctatcagggtaagggccag
aaccgtggccgtcgccctgctgctgcgcctggcgccgcaccggctgctggcggcgctgca
cgccccgccaatccgggccgccctgcgggtggcgcgccacgtaccggttctggtacgggt
gcaccgaagcgcaatggttcgggttcttcgacgccgcgctcgcgtgacagccagccgcgc
ggtcgtcgcccggcacgcgaagatcaacccttgccgcgcgaaggccaggagcccgctgta
cgcgccccgcgcgacggccagcctcagccaaagatcgtgcacaaagagtcaaagatcgac
cgcttcccgtctgccgagcaactggaccagttgccagcacgcccacgcggtgaaaaaccg
gcgctgctgacccgcaaccgcgacagctga
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