Cutibacterium acnes 266: PAZ_c05710
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Entry
PAZ_c05710 CDS
T01971
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
paw
Cutibacterium acnes 266
Pathway
paw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
paw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PAZ_c05710 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paw03400
]
PAZ_c05710 (mfd)
Enzymes [BR:
paw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PAZ_c05710 (mfd)
DNA repair and recombination proteins [BR:
paw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PAZ_c05710 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
RecG_dom3_C
UB2H
MFD_D3
Glyco_tran_WecG
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AEE71765
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All DBs
Position
584994..588662
Genome browser
AA seq
1222 aa
AA seq
DB search
MLWGGESSRTTSRVMVSVGTTTYPMLVTFGGLTSLLSREPVLSHVVEDALTRRTPTLDLQ
VAASARPAVAAVLGRSLDGSGRLPVLLVTSTFREAEESVATLKTWLGADAVCYYPSWETL
PHERLSPRTDTVGRRMEVLRRLCGTEGEVPQVVVAPVRSLLQPQVAGLGRVAPVRLAVGE
EHDLTELATELVNAAYSRVDMVERRGEFAVRGGIVDVFPPVLEHPVRIDFFGDEIEEMTS
FAVADQRSTDETHQELICAPCRELILTDEVRSRAKALLTDHPELADMLERIGNGQAVEGM
EALMPALVDEMELLVDVLPEHAMVVLSDPEMVRSRAADLVRTSEEFLGAGWAAAAGGGQA
PIDLAASGYRSLAQVRSHCLERGMAWWSMSSFSLDSSATDVLVDDDITSAPQTVNPQLVA
VEPWHGDVEAAVKDLTARLDDGWTVLLCAEGEGMAKRMSELLGEHNVAARLVDDVDPDAT
EPCVQVIRLHQRHGFAAESVKLLVASTGDLAESQDPGGTGERRMPRRRRNQIQPLELKPG
DLIVHEQHGVGRYVEMVQRTVGGATREYLVIEYAPSKKGQPGDRLFVPVNSLDQVTRYVG
GDAPSLDRMGGGDWRKRKARARKAVREIAAELIKLYAARQATKGHAFGPDTAWQRELEGA
FAYVETPDQLTTIADVKRDMEQVVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLV
PTTLLVQQHFQTFTERYAGFPVKVAALSRFQTDTEARETLEGLQRGTVDVVVGTHRLLAK
EVEFKDLGLVIVDEEQRFGVEHKEALKRMRVNVDVLAMSATPIPRTLEMAVTGIREMSTI
ATPPEERHPVLTFAGPYDEGQVVAAIRRELAREGQVFYIHNRVQSIEKTAAKLRELVPEA
RIVTAHGQMNEKQLEQIMVDFWERHADVLVCTTIVESGIDISTANTLLIDRADLMGLSQL
HQLRGRVGRSRERGYAYFLYPADKPLSQTAHDRLATMAAHTDLGSGMAIAMKDLEIRGAG
NLLGGEQSGHIADVGFDLYIRLVGDAVAEFRGDSTTADEPEMRIELPVDANLPVEYVETE
RLRLEMYKRLAEVRSDEEVDAIGAELVDRYGPMPEPVQALLGVARFRLLCRQAGIHEVVP
AGRNIRFSPVNLPESRVMRLKRLYPGSVVKQTAGLVLVPKPMTATIGGQPLGGADLLKWS
ADLVTNVLAVDTPIGAGRPTEP
NT seq
3669 nt
NT seq
+upstream
nt +downstream
nt
atgctatggggaggggagtcctcgagaacaacttcacgagtgatggtgagtgtcggtacc
accacgtaccctatgttggtgacttttggcggactgacctcccttctttcccgcgaaccg
gtgctctcccatgttgtggaggacgcccttacccggcgcactcccacccttgaccttcag
gtggcagcttcggcccgcccggcggtggcagccgtactgggccggtctctcgacggttcc
ggacgtctgccagtattactcgtgacgagcacgttccgagaggccgaggaatcagttgct
accttgaagacgtggctcggcgccgacgctgtctgttactacccatcgtgggagaccttg
cctcatgagcgtctgagcccgcgtacggacaccgtcggtcgacgcatggaggtgctgcgt
cggctgtgtggtaccgagggtgaggtaccacaggtggtggtcgccccggtgcgctccttg
ctgcagcctcaggttgccggtctgggacgcgtcgccccggtgcgcctggcagtgggagaa
gagcatgaccttaccgagctcgcgactgaactcgtcaacgccgcctatagccgggttgac
atggtggaacgccgtggcgaattcgcagtacgtggcggcatcgtcgacgtcttcccaccg
gtgctagaacacccggtccgtatcgatttttttggtgacgagatcgaggaaatgacctcc
ttcgcggtagccgaccagcgatccaccgacgagactcaccaagaactgatctgcgctcct
tgccgtgagctcatcctcaccgacgaggtacgttcccgagccaaggctttgctgaccgac
catcccgaattagctgacatgttggagcggatcggcaacggtcaagctgtcgaggggatg
gaggctcttatgccggccctcgttgatgagatggaactactcgtcgacgtcttgcctgag
catgccatggtcgtcctgtcagatccagagatggtgcgctctcgtgctgcggatctggtt
cgcacctccgaagagttcctcggtgctggatgggcagctgccgccggcggcggacaagct
cctattgacctggctgcttcgggttatcgcagcttggcccaggtaagatcgcactgtcta
gagcgcggcatggcctggtggtcgatgtcctctttttctctggattcttcggcaactgat
gtcctcgtcgacgacgacatcaccagtgctccgcaaacggttaatccccagctcgtggcc
gttgagccgtggcatggcgacgtcgaggcagctgttaaggatctgacggctcgccttgac
gacggctggacggtcctgttgtgcgccgagggtgagggcatggccaaacgcatgtccgag
ctgttgggggagcacaacgtcgcggccagactggttgacgatgtcgacccggatgccacc
gagccatgcgttcaggtcatccgacttcaccagcgtcatgggttcgcggccgagtctgtc
aaactgctcgttgcttccaccggtgacctcgccgagtcccaggatcccggtggcactggc
gaacgtcgcatgcctcgacgacgtcgaaatcagatccaacccctggagctcaagccgggc
gatctcatcgtccacgagcagcacggtgtggggcggtacgtggagatggtgcagcgcact
gtcggcggcgctacccgcgagtacctcgttatcgagtacgcgccctccaaaaaaggtcag
cctggtgatcgcctcttcgtgccggtgaactcgctggatcaggtgacccgatatgtcggt
ggggatgcccccagcctcgaccgtatgggtgggggagactggcgcaagcgcaaggcgcgt
gcccgcaaggcggtccgtgaaatcgccgccgagctcatcaagctctatgctgctcgccag
gccactaaggggcatgctttcggccctgacactgcgtggcagcgggagttggagggcgcc
ttcgcttacgtcgagacacctgaccagctcaccaccattgccgacgttaagcgtgacatg
gagcaggtcgttccgatggaccggctggtctgtggtgatgtcggctacggtaaaaccgag
atcgcggtacgtgctgcgtttaaggcggttcaggacggcaagcaggtggcggtgctggtg
cccactactttgctggtgcagcagcatttccagaccttcactgagcgttacgcaggtttc
cccgtcaaggtggcggccctgtctcgtttccagactgacaccgaagcccgcgaaaccctc
gagggacttcaacgcggtaccgtcgacgtcgtcgtcggtacccatcgcttgctggccaag
gaggttgagttcaaggatctcggcttggtcatcgtcgacgaggaacagcgttttggcgtc
gagcacaaagaagcgcttaaacgcatgagggtcaacgtcgatgtgcttgctatgagcgct
acgccgatcccgcgcaccttggagatggcggtgacaggcatccgcgagatgagtacgatc
gccaccccaccagaggagcgtcacccggtgctcactttcgccggaccctatgacgagggg
caggttgttgcggcgatccggcgtgaacttgctcgtgaaggtcaggtcttttacatccac
aaccgcgtgcagtccattgaaaagacagctgccaagctgcgtgaacttgttccagaagcg
cggattgtcactgcgcacggccagatgaacgagaaacagctggaacagatcatggtggac
ttctgggagcgtcatgccgacgtcctggtatgcacgacgatcgttgagtcgggtatcgac
atttctaccgccaatactctgctcatcgatcgagctgaccttatggggctgtctcaactg
caccagttgcgtggtcgtgtggggcggtctcgggagcgtggctatgcctacttcttgtac
ccggcggacaagccactctcccaaacggctcacgaccgcttggcgacgatggccgctcac
accgacctgggttctggcatggccatcgccatgaaggatctggagattcgcggcgccggg
aatctgcttggtggtgagcagtccgggcacattgctgacgttggcttcgatctttacatt
cgtctggtaggtgacgccgtcgctgagttccgtggggacagcaccactgccgatgaaccg
gagatgcgtattgagctgcccgttgacgccaaccttccggttgagtacgtcgaaactgaa
cgcttacgccttgagatgtacaagcgattggctgaagtgcgcagtgacgaggaggttgac
gccatcggggccgagttggtcgaccgttatggaccgatgcccgagcccgtccaagctctg
cttggggtggcgcgattccgcctgctatgtcgacaggcgggaattcatgaggtcgttccg
gctggacgcaacatcaggttttcgccggtgaatctgccggaatcccgggtgatgcgcctc
aagaggttgtatcccggatcggtggtcaagcaaacagcgggtttggtgctggtgcctaaa
cccatgactgcaacgattgggggccagccattgggcggtgccgacttgttgaagtggagt
gccgacctcgtgacgaacgtcctggctgttgacaccccgatcggcgcgggccggcccact
gagccatag
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