Pseudomonas azerbaijanorientalis: KSS91_11075
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Entry
KSS91_11075 CDS
T07706
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
paze
Pseudomonas azerbaijanorientalis
Pathway
paze03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
paze00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KSS91_11075 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
paze03400
]
KSS91_11075 (ligD)
Enzymes [BR:
paze01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KSS91_11075 (ligD)
DNA repair and recombination proteins [BR:
paze03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KSS91_11075 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QXH63981
LinkDB
All DBs
Position
2498009..2500021
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AA seq
670 aa
AA seq
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MPRNLDNRRDFSATGEPAGKRSSKEKSSPLTGACKARLPNLLKPELATLVDRVPDGSWSY
EIKFDGYRIMARIDHGDVRLLTRNGHDWTHKLPGQAQALVALGLESAWLDGEMVVADDQG
VPDFQALQNAFEAQRSDGILYYLFDLPYLNGVDLREVPVEERRAALATVLKANDQPLLRF
SQSFGEEPQALFDSACRMRMEGLIGKRLGSPYVSRRSSDWIKLKCQHRQEFVIVGFTEPK
GSRHAFGALLLGLHDRDTGDLRYAGKVGTGFNEATLRSLHEQLKPLQVKKPSVVNPPGGA
EARDVHWLKSRLLAEVAFAEMTRDGSVRHAVFHGLRNDKPAHDITEERANTVKTSTAKKT
AATQKKPDPAPSQVGLEAGQVRITHPDRVIDPGSGTTKLQLAQYYASVAEWILPELKDRP
VALVRAPDGIAGELFFQKNAEHLAIPGIATLDKQLTGQPMMLINNAEALIGAVQMSTVEL
HTWNATSANFDKPDRFILDLDPDPALPWKRMIEATELTLSVLDELGLKAFLKTSGGKGIH
VVVPLSRKLGWDEVKDFSHAIVSHMARLLPERFSAVSGPKNRVGRIFIDYLRNGLGATTI
CAYAVRTREGLPVSMPIFRQEVAELKGGNQWNLHNALERLAEVGDEPWADMRKTRQAITA
EMRRRVGMKK
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgccccgcaacctcgataacaggcgcgatttttcggcgactggcgagccagccggcaag
cgctcgagcaaggaaaaatcatcgccactgaccggcgcctgcaaagccaggttgccgaac
ctgctcaagccggaactggcgacgctggtggacagggtcccggacggctcgtggagttac
gaaatcaagttcgacggctaccggatcatggctcgcatcgaccacggtgacgtcaggctg
ctcacccgcaatggccacgactggacccacaaactgccaggacaggcccaggccctggtc
gcgcttggcctggaatcggcgtggctcgatggtgaaatggtggtggccgacgaccagggt
gtgccggactttcaggcgctgcaaaacgccttcgaggcgcagcgcagcgacggcattctc
tactacctgttcgacctgccgtacctcaatggcgtggacttgcgcgaagtgccggtcgaa
gaacgtcgggcggcgctggcgactgtgctcaaggccaatgaccagccgctgctgcgcttc
tcccagtcgtttggcgaggagccgcaagccttgttcgacagcgcctgccggatgcgcatg
gaaggcttgatcggcaagcgtcttgggtcgccctatgtctcccggcgcagtagcgactgg
atcaagctcaaatgtcagcatcggcaggagttcgtcatcgtcggattcaccgagccgaaa
ggctcgcgccatgccttcggcgcgctgctgctggggctgcatgaccgcgacactggcgat
ttgcgctatgccggcaaagtcggcaccgggttcaacgaggcgacgctgcgcagtctccat
gagcagctcaagccattgcaggtgaaaaaaccgtcggtggtcaatccacccggcggtgcc
gaggccagggatgtgcattggctcaaatccaggctgctggcagaagtggctttcgctgaa
atgacccgggacggttcggtgcgccatgccgtgttccatggcctgcgcaatgacaaaccg
gcacacgacatcaccgaggagcgcgcgaacaccgtgaaaacctccactgcgaaaaaaacc
gctgccacacaaaagaagcccgaccccgcaccctcgcaagtcggcctggaagcggggcag
gtgcgcatcactcacccggaccgggtgatcgaccccggcagcggcaccaccaagctgcaa
ctggcgcagtactacgcgagtgtcgccgagtggatcctgccggaactcaaggatcgcccg
gtggcactggtgcgtgcgccggacggcatcgccggcgagctgtttttccagaagaatgcc
gagcacctggcgatccccggcatcgccacgctggacaagcagctcaccggtcagccgatg
atgctgatcaacaatgccgaggcgctgatcggcgcggtgcagatgagtaccgtggagtta
catacctggaacgccacgtcggccaacttcgacaagccggaccgttttatcctcgacctt
gacccggacccggcgctgccatggaaacgcatgatcgaggccaccgagttgacgctgtcg
gtgctggatgagctggggctcaaggcgtttctgaaaaccagcggcggcaagggcatccat
gtggtggtaccgctgagccgcaagctcggctgggatgaggtcaaggacttcagccatgcc
attgtcagccacatggccaggctgttgcccgagcgtttttcggcggtgtcgggaccgaag
aaccgggtcggacggatcttcatcgattacctgcgcaacggcctgggtgcgaccaccatc
tgcgcctacgccgtccgcacccgtgagggcctgccggtgtcgatgccgatctttcgccaa
gaggttgccgagctcaagggcggcaatcagtggaacctgcacaacgcgcttgaacgcctg
gctgaagtcggcgatgagccctgggcggacatgcgcaagacccggcaggcgatcactgcc
gaaatgcgcaggcgggtggggatgaagaagtga
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