Pseudomonas brassicacearum subsp. brassicacearum NFM421: PSEBR_a1759
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Entry
PSEBR_a1759 CDS
T01472
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pba
Pseudomonas brassicacearum subsp. brassicacearum NFM421
Pathway
pba03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PSEBR_a1759
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pba03400
]
PSEBR_a1759
Enzymes [BR:
pba01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PSEBR_a1759
DNA repair and recombination proteins [BR:
pba03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PSEBR_a1759
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
AroM
Motif
Other DBs
NCBI-ProteinID:
AEA67970
UniProt:
F2K9I5
LinkDB
All DBs
Position
complement(2155684..2159133)
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPLLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELSHGVLVVPITTALHRLAPT
QFLLGSSLVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPENQRSIDKVQSIRLLPAKEFPLQKDAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFEETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRIDPSRPLLPPAELFLPVEDCFARLKSWPRVVASQQDVETGVGRERFPAKALPDL
AIEAKATQPLAALAGFLDAFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVAG
KDRLAITIAPLNDGLVLDDPALALVAESPLFGQRVMQRRRREKRADAANDAVIKNLTELR
EGAPVVHIDHGVGRYLGLATLEIDNQAAEFLTLEYAEGAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYETFSAGFP
FEETVDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSTKEVNAAVADLAEGKIDIVIGTHKLLQDDV
KFKSLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
GIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEINLRVPALIPEDYLP
DVHARLILYKRIASASDEEGLKDLQVEMIDRFGLLPEPTKNLVRTTQLKLKAEQLGIKKV
DGGPNGGRIEFEAQTPVDPLVLIKLIQGQPKRYKFEGATMFKFMVPMERAEERFNIVEAL
FERLTPTTA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgttctgcgtcttccgcttctccctgccgcggcaggtaaacagcactggggcaac
ctgcccggtgccgccctgagcctggccatcgccgaggctgccagcgctgcaaagcgtttc
accctgctattgaccgccgacagccaaagcgccgagcggctggaacaggagctgagtttc
ttcgccccggatttgccggtcttgcatttcccggactgggaaaccctgccctacgatctg
ttttcaccgcaccaggacatcatttcccagcgaatcgccagcctttaccggctgccggaa
ctcagtcatggcgttttggtagtgccgatcaccacggccctacatcgcctggcaccgacc
caattcctgcttggcagcagcctggtgctggacatcggccagaagctcgatgtcgagcaa
atgcgcacgcgccttgaggccagtggctatcgctgcgtcgacacggtgtacgagcatggc
gagttcgcggtacgcggcgccttgatcgacctgttcccgatgggcagcaaactgccttat
cgcatcgacctgttcgatgacgaaatcgagaccctgcgcaccttcgacccggaaaaccag
cggtccatcgacaaagtgcagtcgatccgcctgttgccagccaaggagttcccgctgcag
aaagatgccgtgacccgcttcaaggcgcgctttcgcgagcgcttcgatgtggatttccgg
cgctgcccgatcttccaggacctgagcagcgggatcacgcccgccggtatcgagtactac
ctgccgctgtttttcgaagaaacctccaccctgttcgattacttgccccaggacacccaa
gtgttttccctgccgggcatcgagcaggctgcggaaaacttctggaacgacgtacgcaac
cgctacgaagaacgtcgcatcgatccttcccggcctctattgccgccagccgagctgttc
ctgccggtggaagactgttttgcccgcctcaagagctggccacgggtggtggcgagccag
caggacgtggaaaccggcgtcggccgtgaacgtttcccggccaaggcgttgccagacctg
gccatcgaagccaaggccacgcaacctttggcggcgctggctggctttctcgatgcgttc
cccggtcgcgtcttgttcaccgccgaatccgcgggtcgtcgcgaagtgctgttggagctg
cttgagcgcctgaagctgcgaccgaagacggtggacagctggccggacttcgtcgccggc
aaggatcgcctggcaattaccatcgcgccgttgaacgacggcctggtcctggatgacccg
gccctggccctggtcgccgaaagtcctttgttcggccagcgcgtcatgcagcgccgccgt
cgcgagaaacgcgccgacgccgccaacgacgccgtcatcaagaacctcaccgaactgcgc
gaaggcgcacccgtggtgcacatcgaccacggcgtgggccgctacctgggcctggcgaca
ctggaaatcgacaaccaggccgccgagttcctgaccctggaatacgccgaaggcgccaag
ctctacgtgccggtggcgaacctgcacctgatcgcccgctacaccggcagcgacgacgcc
ctggccccgctgcatcgcctgggctcggaaacctggcagaaagccaagcgcaaggcggcc
gaacaggtgcgcgacgtggccgccgagctgctggacatctacgcccgccgcgcggcccgc
gagggctatgccttcgccgatccgaaagccgactacgaaaccttcagcgccggtttcccg
ttcgaagaaaccgtcgaccagcagaccaccatcgaagccgtgcgcgccgacatgctcgcg
cccaaacccatggaccgactggtgtgtggcgatgtgggcttcggcaagaccgaagtggcg
atgcgcgctgcgttcattgccgtgcacggtggcaagcaggtggcgatcctggtgccgacc
accctgctcgcccagcagcactacaacagtttccgcgaccgctttgccgactggccggtg
accgtggaagtgatgagccgtttcaaatccaccaaggaagtgaacgccgccgtggccgac
ctggccgagggcaagatcgacatcgtcatcggtacgcacaagctgctgcaggacgacgtg
aagttcaagagcctggggctggtgatcatcgacgaagagcaccgctttggcgtgcgccag
aaagaacagctcaaggccctgcgcagcgaagtcgacatcctgaccctgaccgccacgccg
atcccgcgcacgctgaacatggcggtgtcgggcatgcgcgacctgtcgatcatcgccacg
ccgccggcccggcgcctgtcggtgcgcacctttgtcatggagcagaacaaaagcacggtc
aaggaagccttgctgcgtgagttgctgcgtggcggccaggtctattacctgcacaacgac
gtgaagaccatcgagaaatgcgccgccgacctcgccgaactggtgccggaagcgcggatc
ggcatcggccacgggcaaatgcgcgagcgtgaactcgaacaggtgatgagcgacttctac
cacaagcgcttcaacgtgctgatcgcctcgaccatcatcgagaccggcatcgacgtgccg
agcgccaacaccatcatcatcgagcgcgccgacaaattcggcctggcccagctgcaccag
ttgcgcggccgggtcggtcgtagccaccaccaggcctatgcctacctgttgacgccaccg
cgccagcaaatcaccccggatgcggaaaagcgcctggaagccatcgccaatacccaggac
cttggcgccggcttcgtgctggccaccaacgacctggaaatccgcggtgccggcgaattg
ctcggcgacggccagagcggccagatccaggccgtcggcttcaccctgtacatggaaatg
ctcgagcgcgcggtcaagtcgatccgcaagggcgaacagccgaacctcgatcaacccctg
ggcggcgggccggaaatcaacctgcgggtgccggcactgatcccggaagactacctgccg
gacgttcacgcacggctgatcctctacaaacgcatcgcctcggccagcgacgaggaaggc
ctcaaggacttgcaagttgagatgatcgaccgcttcggcctgctgccggaaccgaccaag
aacctggtgcgtaccacgcagctcaagctcaaggccgaacaactgggcatcaagaaagtc
gacggcggccccaacggcggccggatcgagttcgaggcccagaccccggtcgatccattg
gtgctgatcaagttgatccagggccagcccaaacgctacaagttcgaaggtgccacgatg
ttcaaattcatggtgcccatggagcgcgcggaagagcgtttcaatatcgtagaggcgctg
ttcgagcgcctcactccgaccactgcttga
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