Pseudomonas brassicacearum subsp. brassicacearum NFM421: PSEBR_a2838
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Entry
PSEBR_a2838 CDS
T01472
Name
(GenBank) Putative DNA ligase (ATP)
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pba
Pseudomonas brassicacearum subsp. brassicacearum NFM421
Pathway
pba03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PSEBR_a2838
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pba03400
]
PSEBR_a2838
Enzymes [BR:
pba01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PSEBR_a2838
DNA repair and recombination proteins [BR:
pba03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PSEBR_a2838
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AEA69138
UniProt:
F2KHD2
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All DBs
Position
3513766..3516381
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AA seq
871 aa
AA seq
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MSSKTLDDYNRMRNFAATPEPAAKRSRKSAKTAHALQFCIQKHDASRLHYDFRLELDGAL
KSWAVPKGPSLDPKAKRLAVHVEDHPLDYATFEGNIPEGHYGAGDVIVWDRGVWIPQDDP
HEAYEKGRLKFELQGEKLSGLWNLVRTHMPGKQEQWFLIKHQDQAARPESEYDVVQAEPN
SVLSDRTLVPKRRGKAAAAKAVKQPEKAVQAKSPRGAAKTTLSGAVAGPLPDTLKPELAT
LVESAPDGEWLYEIKFDGYRVMACIEHGDVRLLTRNGHDWTHKLPRQAEALAELGLESAW
LDGEMVVANDQGVPDFQALQNAFEAGSSGKIAYYLFDMPYLNGMDLRKVPVQERRAALAA
VLEPNESPLLRFSDAFEETPEALLNSACQMQMEGLIGKRIGSAYVSRRSNDWIKLKCKNR
QEFVVVGFSDPKGARSAFGALLLGLHDADSGQLRYAGKVGTGFNETTLKSIYQQLLPLET
KKAAVVNPPSGYEAKGVHWLEPTLLAEVAFAEMTKDGSVRHAVFHGLRNDKPAKDITQEL
VKPVKKTAAAKKTKAKHEPGATPAKTKSKAKAPALDGKVRITHPERVIDASSGTTKLQLA
EYYASVAEFILPELADRPVALVRAPDGIAGELFFQKNAERLAIPGITSLDKALTGQPVMI
INNAEALIGAVQMSTVELHTWNATSVDLDKPDRFVLDLDPDPALPWKSMVEATQLTLSVL
DELGLKAFLKTSGGKGIHVVVPLTRKLGWDEVKGFSHAIVSHMAKLLPDRFSAVSGPKNR
VGRIFIDYLRNGLGATTICAYAARTREGLPVSVPVFREEVAELKGANLWNVHNVHERLAE
VGHEPWAGLKRTRQSITAEMRRRIGMRETDK
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcaagaccctggatgactacaaccgcatgcgcaactttgccgccaccccggag
ccggcggcgaagcgctcgcgcaaatcggcgaagactgcccatgccttgcagttctgtatt
caaaaacacgacgcctcgcggctgcattacgattttcggctggagctggacggtgcgctc
aagagctgggcggtgcccaaaggcccctccctggacccgaaagccaagcgcctggcggtg
catgtcgaagaccatccgctggattacgccacgttcgaaggcaacatccccgagggccat
tacggcgccggtgacgttatcgtctgggatcggggcgtctggattccccaggatgatccc
catgaggcctatgaaaagggccggctcaagttcgaactgcaaggcgaaaagctcagcggc
ctgtggaacctggtgcgcacccacatgcctggcaagcaggagcagtggttcctgatcaaa
catcaggaccaggccgcccgccccgagagtgaatacgacgtggtccaggccgaaccgaac
agcgtgctcagcgatcgcaccctggtgcccaagcgccgcggcaaggccgctgcagccaaa
gcggtgaaacaaccggaaaaggccgtgcaggcgaaatcgccaagaggcgccgcgaaaacc
accctcagcggcgcggtcgccggaccgttgccggacaccctcaagccggaactggcaaca
ctggtggaaagcgcgcccgacggcgagtggctctatgaaatcaagttcgacggttaccgg
gtcatggcgtgcatcgaacacggcgacgtaaggctgctgacccgcaacggccatgattgg
acccacaaattgccaagacaggccgaagccctggctgagctgggcttggaatcggcctgg
ctcgacggcgagatggtggttgccaacgaccagggcgtgccggacttccaggccttgcag
aatgccttcgaggccggcagcagtggcaagatcgcctattacctgttcgacatgccgtac
ctcaatggcatggatttgcgcaaagtgccagtgcaagaacgccgggcggcattggccgca
gtgctggagcccaatgaaagccccttgctgcggttttccgatgctttcgaagaaactccc
gaagcgctgctcaacagcgcctgccagatgcagatggaagggttgatcggcaagcgcatc
ggcagtgcctatgtgtccaggcgcagcaacgactggatcaagctcaagtgcaagaatcgc
caggagttcgtggtggtgggcttcagcgatcccaagggcgctcgcagcgccttcggtgcc
ttgctgctggggctgcatgacgctgacagcggccagttacgctatgccggcaaggtcggc
accgggttcaacgaaaccacccttaaaagcatctaccagcaactgctgcccctggagacc
aaaaaggccgccgtggtcaacccgcccagcggttacgaagccaagggcgtgcactggctc
gaaccgacgctgttggccgaagtggcctttgccgaaatgaccaaggacggctcggtgcgc
catgcggtcttccatggcttgcgcaacgacaagccggccaaggacattacccaggagctg
gtcaagcccgtgaaaaaaaccgctgcggcaaaaaaaaccaaagccaagcatgagcctggc
gcgacaccggccaaaaccaagagcaaggccaaggcaccggccttggacggcaaggtccgc
atcactcatccggagcgggtcattgacgccagcagcggcaccaccaagctgcaactggcc
gagtactacgccagcgtggccgaattcatcctgccagaactggcggatcgcccggtggcc
ttggtcagggcgccggatggcatcgccggggaactgttcttccagaagaacgccgagcgc
ctggcgattcccggtatcaccagtctggacaaggcgctgaccgggcagccggtgatgatc
atcaacaacgccgaagcgctgatcggcgcggtgcagatgagcacggtggagctgcacacc
tggaacgccacctcggtcgatctggacaagcctgaccgcttcgttctcgaccttgacccg
gacccggcgctgccctggaaaagcatggtcgaggcgacgcagctcacgttatcggtgctc
gatgagctggggctcaaggcgttcctcaagaccagcggaggcaagggcatccatgtggtg
gtgccgctgacgcgcaagctgggttgggacgaggtcaaggggttcagccatgcgattgtc
agtcacatggccaagctgctgccggaccgtttttcggcggtgtccgggccgaagaatcgg
gtagggcggattttcatcgattacctgcgcaatgggttgggcgctaccaccatttgcgct
tacgccgcccggacccgggaagggttgccggtttcggtgcctgtttttcgtgaggaggtg
gccgagctcaagggggcgaatttgtggaatgtgcacaatgttcatgagcgtctggcggaa
gttgggcatgagccttgggcggggcttaagcggactcggcagagcattacggctgagatg
cgtaggcgtattggtatgagggagacggataagtag
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