Paenibacillus barcinonensis: HUB98_23280
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Entry
HUB98_23280 CDS
T06922
Name
(GenBank) DNA polymerase domain-containing protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pbac
Paenibacillus barcinonensis
Pathway
pbac03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pbac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HUB98_23280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbac03400
]
HUB98_23280
Enzymes [BR:
pbac01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HUB98_23280
DNA repair and recombination proteins [BR:
pbac03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HUB98_23280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
QKS58856
LinkDB
All DBs
Position
complement(5206928..5207818)
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AA seq
296 aa
AA seq
DB search
MPQKVTGSIMVEGVELTVTNPDKLLWPEAGVTKAIYLQKLAALAPYLLTYTRNRLLTTIR
YPHGVGGTFFYQKNAPEPVPDFVHTQNYEGIRYIVMNELPQLLWLGNLAALEFHPSLHAI
NSALPCEWMIDLDPSVEHEPRIMQAAFIVGETLSSLGLQSIPKTSGATGVQIIVPVTPGV
TFDELRDIGYFVGKYVTQKHPELFTLERLKKERGNRIYFDYLQHYGGKTLASPYTPRAKP
GGTVSTPLTWDEVRRDVSIQDYHLMNIIERLDLVGDLIATVPPQRVELILKHLKKK
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atgccacaaaaagttacaggctccattatggttgagggcgtggaactcaccgtcaccaat
ccagacaagctgttatggccggaagctggcgttaccaaagccatctatctgcaaaagctg
gccgcgctggctccgtatctgctgacatatacacgcaaccgcttgctgacaaccattcga
tatccacatggcgtgggaggaacgttcttctatcaaaagaacgcacctgagcctgttcct
gattttgtgcacacgcagaactatgaaggcatccgatacatcgtcatgaatgagctgcct
cagctgctctggctcggaaacctggctgctcttgaattccacccttcactacatgccatc
aacagcgcacttccatgtgagtggatgattgatctggacccttccgtggagcacgagccc
cgaatcatgcaggccgcattcattgtaggcgagacattatcctcgctcggactgcaatcc
attccgaaaacatccggtgccacaggcgttcagatcattgtgcccgttacccccggcgta
acatttgatgaattgcgagatatcggttactttgtcggcaagtatgtcacacaaaagcat
ccggaattatttacactggaacggctgaaaaaggagcgcggaaatcgaatctattttgat
tatctgcagcattacggtggcaaaacgctcgcctccccctacacacctcgtgccaagcca
ggagggaccgtctccaccccgctgacctgggatgaggtacgccgtgatgtctccattcag
gattatcacttgatgaatattattgaacgtctggaccttgttggcgatctgatcgcaact
gttcctccgcagcgggtggagctgattctgaaacatctgaagaaaaaatag
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