Pogonomyrmex barbatus (red harvester ant): 105422930
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Entry
105422930 CDS
T04903
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein LOC105422930
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pbar
Pogonomyrmex barbatus (red harvester ant)
Pathway
pbar03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pbar00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105422930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pbar03021
]
105422930
03019 Messenger RNA biogenesis [BR:
pbar03019
]
105422930
Transcription machinery [BR:
pbar03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
105422930
Messenger RNA biogenesis [BR:
pbar03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
105422930
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pcf11_helical
CFIA_Pcf11
Motif
Other DBs
NCBI-GeneID:
105422930
NCBI-ProteinID:
XP_011630810
UniProt:
A0A6I9VQ00
LinkDB
All DBs
Position
Unknown
AA seq
1741 aa
AA seq
DB search
MIPAPQQTATSIVPPVKLPPGEPVTTSEAAMREQLLKKQRELLELQKKKIELELLQAKAS
LEQQQRQFDKQAGNLKTEVSTIVPTTNATPITETTTQAKLIAPVVPNQTSKQVAKQFPAA
TASLLKNVGANTGPRIAPASSIAVASAKPVSRDPRLKPTPAVQDMIVPTVDPRQRPGTTS
PKESRSEGQAPQVANTIVTNQLKQQILSKSAVTINKSPANSAGSDNPTLLNVINNNHTDT
NNSNNKNFSSNINKDALLHRVSXKKDPRLNINSSGNLNSNNSKSGQNLPVCSNNSSVLST
GNRGSGGGDTNNKSKDSKSSNSRGSSSLIDKSSTSSKSSHRKLGNKSRSKQPQMCPNKIP
KVDRDSSPVRSKSREKDSGDSSPSSRTSPQSSFQASKNRKKNTKSRKRSPSPPYRIPRRN
DAKSSSSLNNSGGVTEEEQSGSLIVSPPHPPAFKEIRPNARQRNYVRRNKDGSLSPERSP
ASAGNAQIGAEPTLESSSKDEDLRAPLSLPGAPVSVPEKKEDLDLRVLPSVNTNKRRSEE
HIEATPPKKTKAEKFDALFGNEDVDLRTLTHPKAGRPPTPPPPVISGEDGKDSWAKLKTP
TKNDRDKQVNNTDDKRERDRNRDRLGRLRLYNKLPDDPKERRRTLSNEEQDVRPGRRGRE
NDKPERNDDRNIEIIMKQAAEQLNQGSITKMQYNTLIQEVLHMSEDRKLRAAQRKEKEGG
TVIWEKGINIDMSGPGDRAATFSPSNDKEVMRGKEHPIPRNPNGPRWQNQPWQQPWAHPP
GPPYGGPQHFNSDMRPVGPPWQNPRHFPMRPDYQYHGSFNHNMGSNPRLPGIMGPMGPNG
PIVPNILPNGPMGPMGPMPNPSMTIGCHPAIIMNNGPMTNLMTNMPPLASGRNVSPNTSS
KYDLEDNDQNYGNTIMKNPNSHSRELPSPDPKLLTEIARDTMKSINIDNIPREIRYYGQT
GVVFMNWDDPREIGFQDGIRRILIDEKDTITCAFNDQYKEFMYEGEVHRIKLGAPTRELY
VDDCWYECYFGGMPITIELGGKKVSVKLEGPPPQVKIGTVKRTDLVVAKINLIINARNMV
PVFLDAKPQIFEIEGKPHTLEFTDALQTVHLNGRPFKVEFGGLPKPIIVRDKKHFIRFSV
LPRGVRAGHVKITGMRGEGPIESPPPATSVVTQKPKVDVTPTPSQVPTTEHESTSQDGSD
FTSTSKPDLQLDILSSVLPSAMAPSSGLSYQAEPVENPPVPAPTLPLNMSELFQRLVETG
IVPNLMEQKKQEEEEKKEPEITPVSFDKPETLKIKQPAIATALYSGMQCSSCGARFAPEL
ATRYSHHLDWHFRQNRRERDSARKAHSRPWYYDVSDWIQFEEIEDLEDRAKTWFETEKQT
AETEGTATDDSPQETLQPSVPTGSDEDSRCQVCHDAFEQFYNEEKEEWHLRPAVNYENKN
YHPLCLEDYKEKNLARSLEKSALTLEETVTEVEENKVECSEETPGDEIKQEESDAEVSNK
EHQSAGNLNEVELNVLKLLDIAASKNKEESDKADNSEVPQDVTEEKEKVESANEENNTDE
GITEDGEKDAPAVNKEDESTGESAPVSFENIKIKEEPLDDDDIDEQPESEIFDFANVEIK
EEPMEPEPDPEQIVNESGTVDTTYAAVKSSIDGNVELDSTPAAIPAAPSRIKINITKPLN
TNKEPEENKEKEKVTVETPIEENAEQPLVAASIKPSLQGRKLSNLPPVEKGQELSGLCSI
M
NT seq
5226 nt
NT seq
+upstream
nt +downstream
nt
atgataccagcgcctcaacaaaccgcgacgtcgatagttccgcccgttaaattgccgcca
ggagaaccggtaacaacgtcagaagcagcaatgcgagaacagctactaaaaaagcaacga
gaattattagaattacaaaagaagaaaatagagttagaattattgcaagctaaagcgagt
ttagaacaacagcagagacaatttgacaaacaagctggaaatttgaagacagaagtatca
acgattgtgcctaccacaaatgctacgccaattacggagacaacgacgcaggcaaaactt
atcgcacctgtagtgccaaatcaaacttcaaaacaagtagcaaaacaatttccagcagcg
acagcatcgcttttaaagaacgtaggtgcgaataccggtccacgaatcgcaccagctagt
agtatagcagtagcatcggctaagccagtctcgcgagatccacgtttgaagcctactcct
gctgtccaggatatgatagtgccaacagtagatccacgacagcgaccgggtacgactagt
ccgaaagaatcgcggagtgaaggtcaagcaccgcaagtggcaaatacaattgtaacaaac
caattaaaacagcagatactttcgaaatcggctgtaactatcaacaagtctccagcgaat
tctgccggatctgataatccgacgttattaaacgttattaataacaatcatactgatacg
aacaatagtaataataaaaatttcagtagtaatataaataaagatgctctcttgcatcga
gtaagtncaaaaaaagaccctcgattaaatattaatagtagtggtaacctgaacagtaac
aattccaagagcggccagaatttaccggtttgcagtaataattcttcagtattgtcaacg
ggcaatcgaggaagtggaggcggtgataccaacaataaatcgaaagattcgaagagctcg
aactcgcgtggctcttcctctttaatcgataaatcttccacttcctctaaatcttcgcat
aggaaattaggcaataagtcgcgatctaaacaacctcaaatgtgtccgaataagattccg
aaagtcgacagagattcgagtccggttaggtcaaaatctcgcgaaaaagacagcggagac
agttcaccgtcctcacgtacctctccacaatcctccttccaagcctctaaaaatcgcaag
aagaatacaaaatcgagaaagcgtagtccaagtcctccgtacagaatacccaggcgtaac
gatgcgaaatcaagctcgagcttgaacaattccggtggtgttactgaggaggagcaatct
ggttcattgatagtatctcctcctcatccacccgcattcaaagagatcaggccgaatgct
agacagagaaattatgtaagacgaaataaagacggcagtcttagtccggaacgttctcca
gccagtgctggaaatgctcaaatcggtgccgagccaactttggaatcttctagcaaggat
gaagatctcagggcaccactgtctctacctggcgcccctgtttccgtacccgaaaagaaa
gaagatttagatctacgagtattaccgtctgttaacactaacaaaagacgcagtgaggaa
catatagaggcgactccaccgaagaaaaccaaagctgaaaagtttgatgcattattcggt
aatgaagatgtggatttgcgtactttgacgcatcctaaagcgggtcggcctccgacacct
ccaccgcccgtgatctccggggaggatggaaaagatagttgggcgaaattaaagacgcct
acgaaaaatgacagagataaacaagttaacaataccgatgataagcgggagagagatcgt
aatcgggatagattgggccgtctcagattgtataataagcttccggatgatcctaaagag
agaaggagaacattgtcgaacgaagaacaggatgtcagaccgggacgcagaggtcgggag
aatgataaacccgagagaaacgacgatagaaatattgagataataatgaaacaagctgcc
gaacaattgaatcaaggttcgatcacgaagatgcagtataatactctgatacaagaagtt
ttacatatgagtgaggatcgtaaactgcgagctgcgcagcgtaaagaaaaagaaggtggt
actgtaatatgggaaaaaggtattaatatagatatgtctggtccaggagatcgcgcagca
acattcagtccgtccaatgataaggaagtaatgcggggcaaggaacatccaataccacgc
aatccgaacggtccgagatggcagaatcagccatggcaacaaccatgggcgcatccacca
ggaccaccgtatggcgggccgcaacactttaattcggacatgagacctgtcggtcctcct
tggcagaatccacgacattttccgatgcgaccggattatcagtatcatggtagttttaat
cataacatgggatcgaatccgcgtttacctggtataatgggtccgatgggcccgaacggt
ccgatcgtgccgaatattttaccaaatggcccgatgggaccaatgggacccatgccaaat
ccttctatgacgataggatgtcaccccgcgataataatgaacaacggaccgatgacaaat
cttatgacaaatatgccacctctagcgtctggtcgaaacgtatcgccaaatacatcttct
aaatacgatcttgaggataacgatcagaattacggtaatacgataatgaagaatccgaac
tcacacagccgcgaattgccatcgccggatccaaagctgttgaccgaaatcgcaagagac
accatgaagtctataaacattgacaatataccacgagagattcgttattatggacagacg
ggtgtagtgttcatgaattgggatgatccgcgagagattggtttccaggatggcataaga
agaatattgattgatgagaaagatacgataacttgcgcatttaatgatcaatacaaggaa
ttcatgtacgagggagaagtacataggattaaattgggtgcacctactcgagaattgtat
gtagatgattgctggtatgagtgttactttggcggtatgccgataacaatcgaactcggc
ggtaagaaagtcagtgtaaaactagagggtcctccgccacaagtcaagatcggcaccgtg
aagcgaaccgatcttgtagtcgcgaaaattaatctcattatcaatgcgagaaatatggta
ccagtattcttagatgcgaaaccacagatatttgaaatcgagggaaagcctcatacgcta
gaatttacagatgcattacaaacggtacatttaaatggacgaccatttaaagttgaattt
ggaggattacctaaacctattattgttagagacaaaaagcatttcatcagattttcagta
ttaccaagaggagtgcgtgctggtcatgttaagatcactggaatgagaggcgaaggtccc
atcgagtcgccgccaccggcgacgtctgtcgtaactcaaaaaccgaaggtagatgttaca
cctacgccaagccaagtgccgaccacggaacatgaatccacatcgcaagatggttcagat
ttcacttccacttcaaaaccagatctgcaattagatatattatcatcagttttaccatca
gctatggcgccgtcatcaggtttgtcgtatcaagccgaacccgttgaaaatccgcctgta
cctgcaccgacattaccattgaatatgagcgaattgttccaaaggttagtcgagactggt
atcgttcctaatctcatggaacaaaagaaacaagaggaagaagagaagaaagagcctgag
attactccagtctccttcgataaaccggagactcttaagattaaacaaccagcaattgct
acagcattatatagtggcatgcagtgcagttcttgcggcgctagatttgcgcctgaatta
gctactcgatacagtcatcatttggattggcactttagacaaaacagacgcgaacgtgac
tccgcaagaaaagcgcattcacgaccatggtattatgacgtcagcgattggatacaattc
gaagagatcgaagatttagaagacagagcaaaaacttggtttgaaactgagaaacagacg
gcagaaacagaaggtacggctactgatgattcgcctcaagaaacattgcagcccagtgta
ccaactggcagcgatgaagattcgcgatgccaagtgtgccatgacgcattcgaacaattc
tataatgaggaaaaagaggaatggcatttgagaccagcagtaaattacgaaaacaagaat
tatcatccgctatgtttggaagattataaggaaaagaatctagcgagatcgttagaaaaa
tcagcgttgacgcttgaggagacagttacggaggtagaggaaaataaagtagaatgttcc
gaagaaacgcccggcgatgaaattaaacaggaagaatctgacgcagaagtgtcgaataaa
gagcaccaatctgcgggaaatttgaacgaagtagaattaaacgtgctaaaactcttagat
attgcagcgtcaaagaataaagaagaatccgataaggcggataattccgaagttccgcag
gatgttactgaagaaaaagagaaagtggaaagcgccaatgaggagaataacacggatgag
ggtatcacggaagatggcgaaaaagatgcacctgcagtaaataaagaagacgagtccaca
ggtgaaagtgcaccagtttcttttgaaaatattaagattaaagaggaaccattggatgac
gatgacattgacgaacaacccgaaagcgaaatattcgatttcgccaacgtggaaatcaaa
gaagaacctatggaacctgaaccagatcccgaacaaattgtgaatgaatccggtacggtt
gatacgacgtatgcggcagtgaaaagttccatcgatggaaatgtagaactggactcgacg
ccagcggctattcctgcggccccatcgcggatcaagatcaatattactaagccgctgaat
accaacaaagagccggaagagaataaagagaaggagaaagtgacagtcgagacgcccata
gaggaaaacgcggaacaaccattagtggcagcttccattaaaccgagtttacagggtagg
aagctatcgaatttacctcccgtagagaaagggcaagaattatcaggactctgctctata
atgtaa
DBGET
integrated database retrieval system
