Pogonomyrmex barbatus (red harvester ant): 105425602
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Entry
105425602 CDS
T04903
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
pbar
Pogonomyrmex barbatus (red harvester ant)
Pathway
pbar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pbar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105425602
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pbar03041
]
105425602
Enzymes [BR:
pbar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105425602
Spliceosome [BR:
pbar03041
]
Complex A
U2 snRNP components
U2 related factors
105425602
Complex B
105425602
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
105425602
NCBI-ProteinID:
XP_011634743
UniProt:
A0A6I9WS72
LinkDB
All DBs
Position
Unknown
AA seq
1031 aa
AA seq
DB search
MVRSSDKDRHHRRRSRSRSRSRSAEPEKKRRRSRSRDRERDRDKGRHRERRSRSRDRDRE
RSDRRERSERDRDRERKRGDSKEKRLTGSKSSRSGKERSNRSRSRDRKDKEKGDNEELPF
DHTKLDKEEEQKRLELEMQKRRERIERWRAERKKKELEATKKDGKTSILANLQLPMKKWS
LEDDSDEETPVVQNNTKEAKEEGVKEEVEEVKEEIKDEEEEIDPLDAFMAEVQEEVRKVN
KFDSKAPKNANNGTNSTSQSGGVVIVTGVAKKKIQKQKGELIEQNQDGLEYSSEEEGENL
HETAAGIANKQKRELAKVDHATTDYQPFRKSFYVEVPEIARMTPEEVEVYKEELEGIRVK
GKGCPKPIKSWAQCGVTKKELEVLKKLGYEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKT
LAFLLPMFRHILDQPPLADGDGPIALIMTPTRELCMQIGRDSKKFTKSLGLSHVCVYGGT
GISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQV
MRIMENVRPDRQTVLFSATFPRQMEALARRILTRPVEVQVGGRSVVCKDVEQHVVVLEED
QKFYKLLEILGHYQDKGSAIIFVDKQENADTLLKDLMKASYSCMSLHGGIDQCDRDSTIL
DFKAGRTKLLVATSVAARGLDVKHLVLVVNYDCPNHYEDYVHRCGRTGRAGNKGYAYTFI
TSEQERYAGDILRAHELAGVPVPEPLRQLWEGYKARQAADGKKVHTGGGFSGKGFKFDES
EAALANEKKKFQKAALGLQDSDDEDIENDIDQQIESMLAPKRTVREIAKPTATNITVPGQ
PVPSATDKLELARRLASKINIAKNLGAEAKGATQQAAEAILKGAGPTNLITAKTVAEQLA
AKLNTKLNYQPREEDLVESDVETGEQTFRKYEEELEINDFPQQARWRVTSKEALAQISEY
SEAGLTVRGTYIAPGKTPPEGERKLYLAIESTSELAVSKAKAEVSRLIKEELIKLQASGA
HTASRGRYKVL
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atggtgcgaagtagtgacaaggacaggcatcaccgacgaagatcgagatcaaggtccagg
tcgagatcggccgaacctgagaagaaacgtcggcgttccagaagcagggaccgagagaga
gatagagacaagggacgacatagagaacggaggagtcgttcgcgagacagagatagagag
aggagtgaccgaagagagcgttccgagagggatagggatcgcgaaagaaaacgtggagac
agtaaagaaaagcgtcttacaggctcaaaatcttcgcgctctggcaaagaacgatccaac
aggtctcgctcgcgtgatagaaaggataaagagaaaggagataatgaagaattgcctttt
gatcatacaaaattggataaagaggaggaacaaaaaagactggaattggaaatgcaaaag
agaagggagaggatagaaagatggcgagcagaaaggaagaagaaagagctggaagcaacc
aaaaaagacggtaagacatctattttggcaaatcttcagctacccatgaaaaagtggtcc
cttgaggatgatagtgatgaagagactcctgtggtacagaataacaccaaggaagcaaaa
gaagaaggtgtaaaggaagaagttgaggaagtgaaagaggagataaaagatgaagaagag
gagattgatccactcgatgcttttatggcagaggttcaagaagaagtgagaaaagtaaat
aaatttgatagtaaagctccaaaaaatgccaataatggcactaattctacatcgcagagt
ggtggtgtggttattgtgactggtgtggctaagaaaaaaatacagaagcaaaaaggagaa
ttgattgaacaaaatcaggatggattagaatattccagtgaagaagaaggcgaaaatctt
cacgaaactgcggccggtattgcaaataaacagaaacgagaattagctaaagttgatcat
gctacaacagattatcaaccatttcgaaaatctttttatgtcgaagtgcctgagattgcg
agaatgacaccggaagaagtagaggtatataaagaagaattggaaggtattcgcgttaag
ggtaaaggttgcccaaaacctattaaatcttgggcgcaatgtggcgttaccaagaaggaa
ttagaagtattaaaaaaacttggttacgagaaaccgacacctattcaatgccaggcgatt
ccggcgatcatgtctggtcgcgatctcataggtatagcaaaaactggtagcggaaagact
ttagcttttcttcttcctatgtttcgtcacatactcgatcaaccaccgctggccgatggt
gatggaccaatcgcgttaattatgacaccaactagagaactgtgcatgcagattggaaga
gattcaaagaaatttacaaaatctctaggtctttcgcatgtatgtgtttacggcggaact
ggcatttcggagcaaattgcagagcttaagagaggagctgaaatcattgtatgtacaccg
ggaaggatgattgacatgctcgccgctaatagcggacgagtaactaatttacgtcgcgtg
acatatgtagtgctcgacgaggccgacagaatgttcgacatgggttttgaaccacaagtg
atgcgcattatggagaacgtgagaccggataggcagacggtattatttagcgcgacattc
ccgcgacaaatggaagcgttagccagacggatattgacaagaccggtggaggtacaggtc
ggtggacgctctgtcgtttgcaaagacgtggagcagcatgtagttgtactcgaggaagat
cagaagttctacaaattgcttgaaattcttggacattatcaagacaaaggttccgctatt
atattcgtagacaagcaagagaatgcggatacattgctaaaagatcttatgaaagcttct
tattcctgtatgtctcttcacggtggtatagaccaatgcgatcgagattccaccatatta
gatttcaaagcgggacgaacaaaattactcgtggccacgtctgttgctgctcgaggtttg
gatgttaagcacttggtattagtcgtcaattatgattgtcccaatcactatgaagattat
gtgcatagatgtggtagaactggtcgggccggaaataaaggatatgcgtatacttttatt
acgtcagaacaagaacgttatgccggcgatattttacgtgcgcacgaattagcgggtgta
cccgttccagaacctttgcgccaattatgggaaggttacaaagctcgtcaagctgctgat
ggaaaaaaggttcacactggaggtggtttcagtggcaaaggatttaagtttgatgaatct
gaggctgctttggcgaatgagaaaaagaaattccagaaagcagctctaggactacaagat
tctgatgacgaggacatagaaaatgatatcgatcaacagatcgaaagcatgttggcacct
aagcgaaccgttcgtgaaatagctaaaccaactgcgaccaacatcacagtacctggtcaa
ccagtacccagtgccaccgataagctcgaattggccagaagattggcgtcaaagataaat
atcgcgaagaatcttggtgccgaggcaaaaggtgccactcaacaagcggcggaagccata
cttaaaggcgcaggtcctacgaatcttattacggcaaagacagttgctgaacaactggct
gcaaagctaaacacgaaattgaattatcagccacgcgaagaagatctcgtggaaagtgat
gtggaaacgggcgagcaaacattccgcaaatacgaggaggaactcgaaatcaatgacttc
ccacaacaagcgagatggcgagttacgagcaaagaggctcttgctcaaatctcagaatat
tccgaggcgggtttaacagtaagaggaacgtacatcgcgcctggaaaaacaccaccagaa
ggcgagagaaaattatatttggcaatagaatcgacgagcgaattggcagttagcaaggcc
aaggcggaagtatctcggcttatcaaggaagaactcatcaaattgcaggcgtctggcgct
cacaccgcatcgcgaggtcgatacaaagttttataa
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integrated database retrieval system
