Pogonomyrmex barbatus (red harvester ant): 105427761
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Entry
105427761 CDS
T04903
Name
(RefSeq) general transcription factor IIH subunit 4
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
pbar
Pogonomyrmex barbatus (red harvester ant)
Pathway
pbar03022
Basal transcription factors
pbar03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pbar00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
105427761
09124 Replication and repair
03420 Nucleotide excision repair
105427761
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pbar03021
]
105427761
03400 DNA repair and recombination proteins [BR:
pbar03400
]
105427761
Transcription machinery [BR:
pbar03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
105427761
DNA repair and recombination proteins [BR:
pbar03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
105427761
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
105427761
NCBI-ProteinID:
XP_011637960
UniProt:
A0A6I9W7A9
LinkDB
All DBs
Position
Unknown
AA seq
467 aa
AA seq
DB search
MSNTISGKNLLRPNGLQCKNLHEYLKSRTPETLNKLYHKPPICLAVFRELPVIAKHYVMR
LLFVEQPVPQAVIASWCSKLYFEEHQKVVQVLNELFVWKEASIPGGLPGWILNNTFKKNL
KIVLLGGGKPWTMSNQLETDSKPRDVAFLDSYALERWECVLHYMVGSQQQEGISADAVRI
LLHAGLMKRDEADGSPVITQAGFQFLLLDTASQVWYFILQYLDTIEARGLDLVECLTFLF
QLNFSTLGKDYSTEGMSEGLLTFLQHLREFGLVYQRKRKAGRFYPTRLALNIATGETKPL
SRDTDKEGYIIVETNYRVYAYTNSNLQVALLGLFCEMLYRFPNVVVSILTRDSVRQALKS
GITASQIVGYLQQHAHSQMIEAGPPILPPTIVDQIKLWENERNRFLFSEGVLYSQFLSQT
DFEVLRDHAVSTGVLIWQSERKRTMVVTKAGHDDVKKFWKRYSKGSS
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgtctaacacgataagcggcaaaaacttgttacggccgaacggcctgcaatgcaagaat
ctgcatgagtatttaaaatcacgtactcccgagactctgaacaagttgtatcataagccg
cctatatgcctggccgtgttccgcgagttgccagtcatcgccaaacattacgttatgagg
ctgctgttcgttgaacagccagtgccgcaagcggttatagcatcttggtgctcaaaactc
tacttcgaggagcaccagaaggtggtgcaggtactgaatgagttatttgtgtggaaggaa
gcatctatacccggtggactaccaggctggatcttgaacaatacgttcaagaaaaatctg
aagatcgtgctgctaggaggcggcaaaccatggaccatgtccaatcagttggagactgac
agcaagccgcgagatgtagccttcctggattcttatgcgctggaaaggtgggaatgcgtc
ttgcactatatggttggatcccagcagcaagagggtatatctgctgatgctgtaaggatc
cttctacatgctggtttgatgaaaagagacgaagctgacggaagtccagttataacacaa
gctggttttcaatttttgcttttagatacagcttcacaagtatggtattttattctacaa
tatcttgatacaattgaggcacgcggtcttgatttagtagagtgccttaccttcctgttt
caattaaatttttccactctcggtaaagattacagtaccgaaggtatgtccgaagggctc
ttgacattcttacaacatttaagagaatttggacttgtatatcaacgaaagcgcaaagca
ggaaggttttatccaacacgattagcattaaatatcgctactggtgaaactaaaccatta
agtagagatacagataaagaaggatatataattgtggaaacaaattatcgtgtttacgct
tatacaaactccaacttgcaagttgcgttacttggacttttttgcgaaatgttgtacaga
tttccgaatgtagttgtatcaatattaacaagagattcagtaagacaagcattaaaaagt
ggaataacggcttctcaaatagttggctatttgcaacaacatgcacatagtcaaatgata
gaagcagggccacctatattgccacctactattgtagaccaaattaagctgtgggaaaat
gaaagaaatagatttttattcagtgaaggagttttgtatagtcaatttctttcgcaaact
gatttcgaggttcttagggatcatgccgtctcaactggagtactaatttggcaaagtgaa
agaaaaagaaccatggtagttactaaagccggccatgatgatgtaaaaaagttttggaaa
cgatattcaaaaggctcaagttaa
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