Pogonomyrmex barbatus (red harvester ant): 105428909
Help
Entry
105428909 CDS
T04903
Name
(RefSeq) histone deacetylase Rpd3-like isoform X1
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
pbar
Pogonomyrmex barbatus (red harvester ant)
Pathway
pbar03082
ATP-dependent chromatin remodeling
pbar03083
Polycomb repressive complex
pbar04213
Longevity regulating pathway - multiple species
pbar04330
Notch signaling pathway
pbar04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
pbar00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
105428909
03083 Polycomb repressive complex
105428909
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
105428909
04350 TGF-beta signaling pathway
105428909
09150 Organismal Systems
09149 Aging
04213 Longevity regulating pathway - multiple species
105428909
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pbar03036
]
105428909
Enzymes [BR:
pbar01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
105428909
Chromosome and associated proteins [BR:
pbar03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
105428909
HDAC complexes
Sin3A-HDAC complex
105428909
BRAF-HDAC complex
105428909
REST complex
105428909
SHIP complex
105428909
MiDAC complex
105428909
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
105428909
Heterochromatin formation proteins
Other heterochromatin formation proteins
105428909
Chromatin remodeling factors
NuRD complex
105428909
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
105428909
NCBI-ProteinID:
XP_011639813
UniProt:
A0A6I9WCA5
LinkDB
All DBs
Position
Unknown
AA seq
497 aa
AA seq
DB search
MDPVKMSMQPHNKKRVCYYYDSDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYR
PHKATADEMTKFHSDEYIRFLRSIRPDNMSEYNKQMQRFNVGEDCPVFDGLYEFCQLSAG
GSVAAAVKLNKQASEICINWGGGLHHAKKSEASGFCYVNDIVLGILELLKYHQRVLYIDI
DVHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNIPLRDGMDDE
SYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKKYNLPF
LMVGGGGYTIRNVSRCWTYETSVALGCEIANELPYNDYFEYFGPDFKLHISPSNMANQNT
PEYLEKIKTRLFDNLRMLPHAPGVQIQAIPEDGAVIEDSEAEEKVNPDDRLPQRDLDKRI
QHENEYSDSEDEGEGGRRDNRSYKGSRKRPRLEKGQEAMDIDIKKEEDIKTEPKDNEKDE
KINPTNEETKKDGGANP
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atggatcccgtaaaaatgtccatgcagccgcacaacaagaaacgtgtttgctactattat
gatagcgatattggaaattattattatggtcaaggacatcctatgaagccgcatcgcata
aggatgacgcacaatctacttttgaactatggtctttatagaaagatggaaatatatcgg
cctcataaagcaactgcagatgaaatgacaaaatttcatagtgatgaatacattagattt
ttgagatcaatacggccagataatatgtcagaatacaacaagcaaatgcaacgatttaac
gtaggagaagactgccctgtttttgacggtttgtatgagttttgtcaattatcagctggt
ggatctgtagctgctgctgtgaagctcaacaagcaagcttcagaaatttgtatcaattgg
ggtggtggtttacatcatgcgaagaagagtgaagcttctggtttttgttatgtaaatgat
attgtacttggaatcttggaattactgaaatatcatcagagagttttgtatattgatatt
gatgttcatcatggtgatggtgtagaggaagctttttatacaacggatagagtgatgaca
gtctcatttcacaaatatggagagtatttccctggaacgggagatcttcgtgatattgga
gcaggaaagggaaagtattacgcggttaatatacctttaagagatggtatggatgacgag
agctatgaatcaatcttcgtccctattatctcaaaagttatggaaacgtttcagccttct
gctgttgttttacagtgtggagctgattcattgacaggcgatcgattaggatgttttaat
ttgaccgtgaggggtcacggcaaatgtgttgaatttgtaaaaaaatataatttaccgttt
ttgatggtcggtggtggtggttataccatccgaaatgtatccagatgttggacatatgaa
acatcggtagctcttggttgcgaaattgctaatgaattgccgtacaatgattactttgaa
tattttggtcccgactttaaattacatattagtccttcaaatatggcaaatcaaaatact
cctgaatacttggagaaaataaaaacaaggctcttcgacaatttaagaatgctacctcat
gcacctggcgtacaaatccaggcaataccagaggatggtgctgttattgaggattcggaa
gctgaagaaaaggtaaatccggatgatagattgcctcaacgcgatctagataaaagaata
caacatgaaaatgaatatagtgatagtgaagatgaaggcgaaggtgggcgaagagataat
agatcatataagggatctagaaagcggccccgtttagaaaaaggtcaagaagccatggat
attgatataaagaaagaagaagatataaagacagaaccgaaagataatgaaaaggatgaa
aaaataaaccccacaaatgaggaaaccaagaaagatggtggcgcgaatccctga
DBGET
integrated database retrieval system
