Polaribacter batillariae: JL193_08220
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Entry
JL193_08220 CDS
T08207
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pbat
Polaribacter batillariae
Pathway
pbat03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pbat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JL193_08220 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbat03400
]
JL193_08220 (mfd)
Enzymes [BR:
pbat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JL193_08220 (mfd)
DNA repair and recombination proteins [BR:
pbat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JL193_08220 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
QTD39208
LinkDB
All DBs
Position
1919228..1922563
Genome browser
AA seq
1111 aa
AA seq
DB search
MSKQHIVNQYQKSANVSQIVTALQQEKNHFQISNLVGSSLSFVISETFKKANKPYLLIFN
DKEEAAYYLNDLEQLLGDKNVLFYPGSYRRPYQIEETDNANVLLRSEVLNRINSRKKPAV
IVTYPTALFEKVVTKKELEKNTLKVTVGENLSLDFVNEVLFEYKFKRVDFVTEPGDFSVR
GGIIDVFSFSNDEPYRIEFFGDEIDSIRSFDVETQLSKEKLKKVSIMPNVENKTLQESRE
SFLKYISSKTIIFTKNIDLLVGNLDKFYQKAEEAFNDLSKEIKHAKPAELFCDGTFIKNQ
LHDFLLVEMSPRAQSRGLSEINFNTIPQPSFNKKFNLLIADLNEHHKAGFTNYIFCANEQ
QAKRFHDIFDDAEQEVHYETVVFPLYQGFVDVDNKLVCYTDHQIFERYHKFRLKNGYAKK
QAITLQELNKLEIGDYVTHMDHGIGKFGGLQKIDVQGKKQEAIKLVYGERDILYVSIHSL
HKISKFNGKDGKAPKIYKLGSGAWKKIKQKTKARVKHIAFNLIQLYAKRKLQKGFAYGPD
THIQHELESSFIYEDTPDQYTATQAVKNDMEKEQPMDRLVCGDVGFGKTEVAVRAAFKAV
DNSKQVAILVPTTILAFQHYKTFSERLKDFPIKIDYLNRFRTAKQKTETISGVNDGSVDI
IIGTHQLTNQKIKFKDLGLLIIDEEQKFGVAVKDKLKTLKENVDTLTLTATPIPRTLQFS
LMAARDLSVIKTPPPNRHPIESHVIRFSEEAIRDAISYEISRGGQVFFIHNRIENIKEVA
GLLQRLVPSAKIGIGHGQMEGKKLEQLMLGFMDNEFDVLVSTTIVESGLDVPNANTIFIN
NANNFGLSDLHQMRGRVGRSNKKAFCYFITPPYHMMTDDARKRIEALVLFSDLGSGINIA
MKDLEIRGAGDLLGGEQSGFINDIGFDTYQKILQEAIEELKENEFADLYPTDSSKPKEYV
KEVQIDTDFEILFPDDYVNSVTERLALYNKLATLKKEEELQTFEKEITDRFGEIPKQVCD
LLDSVRIKWLAKELGIEKMILKQKRMLGYFVANQQSDFYQTEAFSRVLKYVQQNPKSCVM
KEKQTKNGLRLLITFIKIDSVKTGLNILQKI
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
ttgagcaaacaacatattgtaaatcaataccaaaaatctgcaaatgtttcgcagattgtt
acagcccttcaacaagaaaaaaaccattttcaaatttcgaatttggtaggttcttcgttg
tcttttgtaatttccgaaacttttaaaaaagcaaacaaaccttaccttttaatttttaat
gataaagaagaagccgcctattatttaaatgatttagaacaacttttaggagataaaaat
gtgcttttttatccaggatcttacagaaggccttatcaaatcgaagaaacagataatgcc
aatgttttattacgttccgaagttttaaacaggataaattctcgtaaaaaacccgctgta
attgtaacctacccaactgctcttttcgaaaaagtagttactaaaaaagagttagaaaaa
aatacgctaaaagttacggttggcgaaaatttatcattagattttgtaaacgaagtgtta
ttcgaatacaaatttaaacgtgtagattttgttacagaaccaggagatttttcggtacgt
ggaggaattatagacgttttttctttttcgaatgacgaaccttatagaatcgaatttttt
ggggatgaaatagatagcattcgttcttttgatgtagaaacacaactttctaaagagaaa
ttgaaaaaagtttccatcatgccaaatgtagagaataaaaccctacaagaaagcagagag
agttttctgaaatacatctcatcaaaaaccatcatttttaccaaaaatatcgatttattg
gttggaaatttagacaagttctatcaaaaagcagaagaggcttttaacgatttatctaaa
gaaataaagcacgcaaaaccagctgaattattttgcgatggaacttttataaaaaatcag
ttacacgattttttattagttgaaatgtctcctcgagcgcagtcgagaggtctttctgaa
atcaatttcaatacaattccacaaccttcatttaataaaaaatttaatttattaattgct
gatttaaacgaacatcataaagctggttttaccaactatattttctgtgcaaacgaacaa
caagccaaacgttttcatgatatttttgatgatgcagagcaagaagtacattacgaaact
gttgtttttccattataccaaggttttgtagatgttgataacaagttggtttgttataca
gatcatcaaatttttgaacgatatcataaattccgattaaaaaatggttacgccaaaaaa
caagccattacacttcaagaactaaataaactggaaattggcgattatgtaacacacatg
gatcatggaattggaaaatttggtggtttacaaaaaattgatgttcagggcaaaaagcaa
gaagctattaaattggtttatggcgaacgagatattttatatgtaagcattcattcgctt
cataaaatttctaaattcaatggtaaagatggtaaagcaccaaaaatatacaaattaggt
tcaggagcttggaaaaaaattaaacaaaaaaccaaagccagagtaaaacacattgctttt
aatttaattcaattatacgcaaaaagaaaactccaaaaaggttttgcttatggcccagat
acccacatacagcacgagttagaaagtagttttatctacgaagatacgcctgaccaatac
acagctacacaagcagtaaaaaacgacatggaaaaagagcaacctatggataggttggtt
tgtggtgatgttggctttggaaaaacagaagtggctgtaagagctgcttttaaagcagtt
gataatagcaaacaagttgcgattttggttcctactacaattttggcatttcaacattac
aagactttttctgaaagattaaaagattttcctattaaaatagattatttaaatcgtttt
agaaccgcaaaacaaaaaacagaaaccattagtggtgtaaatgatggttctgtagatatt
attattggcacacatcaattaacaaatcaaaaaataaagtttaaagatttaggtctttta
attatcgatgaagaacaaaaatttggtgttgctgtaaaagataaactcaaaactttaaaa
gaaaatgtagatacgttaaccttaactgctactccaattcctagaacgttgcagtttagt
ttaatggcagcaagagatttatctgtcataaaaacaccaccaccaaacaggcatcctata
gaaagccacgtaattcgtttttcggaagaagcaattcgcgatgctatttcgtacgaaatc
tcaagaggagggcaagttttttttattcataatagaattgaaaatataaaagaagtcgct
ggtttgttacaaagactggttccttcagcaaaaataggcattggtcatggacaaatggaa
ggcaaaaaactagagcaattaatgctcggttttatggataatgagttcgatgttttagtc
tcgacaaccattgtagaaagtggtttagatgtaccaaatgcaaacaccatttttattaac
aatgccaataattttggcctgtcggatttacatcaaatgcgtggtagagttgggcgttcg
aacaaaaaagcattttgttattttataacacctccttatcatatgatgacagacgatgct
agaaaacgaatagaagccttggttttattttcggatttaggaagtggaattaacattgcc
atgaaagatttagaaattcgtggtgctggagatttattgggtggcgaacaaagtggtttt
attaatgatattggttttgatacctatcaaaaaatattgcaagaagccattgaagaactg
aaagaaaatgagtttgcagatttgtatccaacagacagctccaaacctaaagaatatgta
aaagaggtacaaatagataccgatttcgaaattttgtttcctgatgattatgtaaattca
gttactgaaagattggctttatacaacaaattagcaacgctaaaaaaagaagaagaatta
caaacttttgaaaaagaaattacagacagatttggagaaatacctaagcaagtctgcgac
ctcttagattctgtaagaataaaatggttggcaaaagaattggggatcgaaaaaatgatt
ctaaaacaaaaaagaatgcttggttattttgttgcaaatcaacaaagtgatttttaccaa
actgaagcattttctcgtgtgttaaaatacgtgcaacaaaacccaaaaagttgtgtgatg
aaagaaaaacaaaccaaaaacggtttgcgattgcttattacttttataaaaattgattct
gtaaaaacgggactgaatattttacagaaaatataa
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