Pseudomonas brassicacearum DF41: CD58_27245
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Entry
CD58_27245 CDS
T03174
Name
(GenBank) RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pbc
Pseudomonas brassicacearum DF41
Pathway
pbc02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pbc00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
CD58_27245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pbc03021
]
CD58_27245
Transcription machinery [BR:
pbc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CD58_27245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
HTH_23
Rv2175c_wHTH
Sigma70_ECF
HTH_17
Sigma70_r3
HTH_24
Peripla_BP_3
HTH_29
MerR
HTH_31
Motif
Other DBs
NCBI-ProteinID:
AHL36335
UniProt:
W8QJ81
LinkDB
All DBs
Position
6089617..6090135
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AA seq
172 aa
AA seq
DB search
MSSVPSPHSDLVGALYRDHRGWLLAWLRRNVACPQRAEDLSQDTFVRLLGRDELKAPREP
RAFLVAIAKGLLFDYFRRAALEQAYLTELMLIPENEQPSVEEQQLILEDLKAIDRLLGKL
SSKARAAFLYNRLDGLGHAEIAARLGVSVPRVRQYLAQGIRQCYIALYGEPT
NT seq
519 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgtcagttcctagcccccacagtgatctggttggtgcgttataccgtgaccatcgc
ggttggctattggcctggctgcggcgcaatgtggcctgtccacagcgggccgaagacttg
agccaggacaccttcgtgcggctgctgggccgtgacgagctgaaggcgccccgcgagccg
cgggcgtttctggtggcgattgccaagggcctgctgttcgattattttcgacgggcagcc
ttggagcaggcttacctcaccgaactgatgctgatccccgaaaacgaacaaccgtcggtg
gaagaacaacagctgattctcgaagacctcaaggccattgatcgtctgcttggcaaactg
tcgagcaaggcccgtgcggcctttctctataaccgcctcgacggcctcggccatgctgaa
atcgccgcgcgcctgggggtttcggtgccccgggtacggcagtatctggcccaaggcatt
cgacagtgctacatcgcactctatggtgagccaacatga
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