KEGG   Plasmodium berghei: PBANKA_1402600
Entry
PBANKA_1402600    CDS       T01111                                 
Name
(RefSeq) DNA ligase I, putative
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
pbe  Plasmodium berghei
Pathway
pbe03030  DNA replication
pbe03410  Base excision repair
pbe03420  Nucleotide excision repair
pbe03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pbe00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    PBANKA_1402600
   03410 Base excision repair
    PBANKA_1402600
   03420 Nucleotide excision repair
    PBANKA_1402600
   03430 Mismatch repair
    PBANKA_1402600
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pbe03032]
    PBANKA_1402600
   03400 DNA repair and recombination proteins [BR:pbe03400]
    PBANKA_1402600
Enzymes [BR:pbe01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     PBANKA_1402600
    6.5.1.6  DNA ligase (ATP or NAD+)
     PBANKA_1402600
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     PBANKA_1402600
DNA replication proteins [BR:pbe03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    PBANKA_1402600
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     PBANKA_1402600
DNA repair and recombination proteins [BR:pbe03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     PBANKA_1402600
   NER (nucleotide excision repair)
    Other NER factors
     PBANKA_1402600
   MMR (mismatch excision repair)
    Other MMR factors
     PBANKA_1402600
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C ICE2
Other DBs
NCBI-GeneID: 55152055
NCBI-ProteinID: XP_034423848
LinkDB
Position
14:complement(172551..175377)
AA seq 898 aa
MKLLLLILLTKMFFCKIKRYMRTEYNYVTPFMKSKLFHNYKNKFNVIILKNIRNNVPNRN
DKYLKCLSFPKKLDGGEQCDTKIEETHVKNEEKEASKRKNTNDDSAKTKKSKVKNENEIK
KGSLFNCKVYEDEKISDLTSPKFNPANFDISNLCLSEKDKIKHKFKDSLLFTFLTNTFNQ
IEELKGSGAGSKKNVAIILSNVFRVLIYYSPNDLIPAVYITLNKVAPDYQNVEAGVGEAL
ILKTMSEAYSRTETSIKKDLQQIEDLGIIAESCSCKMRTIFPLPRLTIQSVFNELKSIPN
ISGSNSQQKKREVIKKLLVSAKTSEAKYIVRFLQQRLRIGVNSATVLQALAYAFVLTRPE
IPENIIKDGKMMNEKLLNEQTMVKGDKDNCNDGTTEVKNENDIKLEKQNDTDNKTNMLDI
DQFNNLVKSIKIRNERMSKPNLFFNIGKEGDTRLLPIFKELKNAYCDINNDSDIFECMEK
SVKSALCELPNIEMIIQNLLSGDDMNVLMKKCTVKTGVPVQPMLAKPTKGIQEVLDRFNN
VTFTCEYKYDGERAQIHYIDKDNIKIFSRNLETMTEKYPDVIQIVKDQIMPGVTESIIDS
EVVAYDIENKKILPFQILTTRKRKDVDIENIKVKICLFPFDLICCNGIPVIKEPLEIRRK
LLYSLLKCKEGVLEYATHSEMNNIDDIDIFLQDAIENNCEGLMVKTLLDNASYEPSRRSL
NWLKVKKDYIEGLSDSVDLVPIAGYYGKGKRSGVYGAFVLAAYNSETENFQTVCKAGTGF
SDEILNALHESLSDKIIPNKKSYYEVSDKLNPDVWFDAHYVWEIKAADLSLSPVHTAAIG
VYSDDKGIGLRFPRFLRLRDDKNPEQATTAQQIVEFYEAQFASKKNKNNNYNDESGSE
NT seq 2697 nt   +upstreamnt  +downstreamnt
atgaaattattattactgatacttttaacaaaaatgtttttttgtaaaataaaaagatac
atgagaactgaatataattatgtaacaccatttatgaaaagcaaattatttcacaattat
aaaaataagtttaatgtgataattttaaagaatattagaaataacgtgccaaatagaaat
gataaatatttaaaatgcttatcctttcctaaaaaattggatgggggcgagcaatgcgat
actaaaatagaagagactcatgttaaaaatgaagaaaaggaagcatcgaaaaggaagaat
acaaacgatgacagtgcaaaaacaaagaaatcgaaagtaaagaatgaaaatgaaataaaa
aagggttcgttatttaattgcaaagtttatgaggatgaaaaaataagtgatttaacatcg
ccaaaatttaatcctgccaattttgatataagtaatttatgcttatctgaaaaggataaa
ataaaacacaagtttaaagattccttattatttacatttcttacaaatacatttaatcaa
attgaagaattaaaaggtagtggggcaggaagtaagaaaaatgtagctattattttatca
aacgtatttcgtgttttaatatattatagtcctaatgatttaattccggcagtatacata
actttaaataaagtggcaccagattatcaaaatgtcgaagcaggtgttggtgaggcatta
atattaaaaacaatgtcagaagcatatagtagaactgaaactagtataaaaaaagatttg
caacaaattgaagatttaggaataatagcagaaagttgttcatgcaaaatgagaactata
tttcctttacctaggttaactattcaatcagtttttaatgaattaaaaagtataccaaat
attagtggttctaattctcaacaaaaaaaaagagaagtaataaaaaaattattagttagt
gcaaaaacatcagaggcaaaatatatagtgcgatttttacaacaacgtttaagaattggt
gtaaatagtgctactgttttgcaagctttggcatatgcttttgtattaacacgccctgaa
attccagaaaatatcataaaagacgggaaaatgatgaatgaaaaattgctaaatgagcaa
acaatggttaagggtgataaagataattgtaatgatggtacaacagaagtaaaaaatgaa
aatgatataaaattggaaaaacaaaatgatacagataacaaaacaaacatgttggacatt
gatcaatttaataatttagtaaaatcaataaagatacgtaatgaaagaatgagtaaaccc
aacttgttttttaacataggaaaagaaggagatactcgtttattacctatatttaaagaa
ttaaaaaatgcatattgtgatataaataacgattcagatatttttgaatgcatggaaaaa
tctgtaaaaagtgctttatgtgaattaccaaatattgaaatgattatacaaaatttatta
agcggtgatgatatgaatgtattaatgaaaaaatgtactgttaaaaccggagttccagtg
cagccaatgctagctaaaccaacaaaaggaatacaagaagttttagacagatttaataat
gttacatttacgtgtgaatacaaatatgatggtgaaagagctcaaattcattatattgat
aaagataatataaaaatttttagtagaaatttagaaacaatgacagagaaatatcctgat
gttattcaaattgtaaaagatcaaataatgccaggtgttactgaatctattattgatagt
gaagttgtagcatatgatattgagaataaaaaaatattaccatttcaaatattaacaaca
agaaaaagaaaggatgtagatatagaaaacataaaagtgaaaatatgcttgtttccattt
gatttaatatgttgcaatgggatacctgtaataaaagaaccattggaaattagaaggaag
ttattatattccttactaaaatgtaaagaaggagtattagaatatgcaacacattcagag
atgaataatattgatgatatagatatatttttacaagatgccattgaaaataattgtgaa
ggtttgatggttaaaactttacttgacaatgcttcttatgagccatcaagacgatcatta
aactggttaaaggtaaaaaaagattacatagaaggattatcagattcagttgatttagtg
cctatagctggatattatggaaaagggaaaagaagtggggtttatggtgcttttgtttta
gctgcatataattctgaaacagaaaacttccagactgtatgtaaagcaggtacaggtttt
agtgatgaaatacttaatgcattgcatgaatcattaagtgataaaattatacctaataaa
aaatcatattatgaagtatcagataaactaaaccctgatgtgtggtttgatgctcattat
gtatgggaaattaaagcagcagacttatcactatcgcctgtccatactgcagctatcgga
gtgtattcagatgataaagggattgggttaagattcccaaggtttcttagattaagggat
gataagaatccagaacaagcaacaacagctcagcagattgtagaattttacgaagctcaa
tttgcctcgaagaaaaataaaaataacaattataacgacgaaagtggaagcgaatag

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