Prionailurus bengalensis (leopard cat): 122494898
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Entry
122494898 CDS
T07574
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
pbg
Prionailurus bengalensis (leopard cat)
Pathway
pbg03030
DNA replication
pbg03410
Base excision repair
pbg03420
Nucleotide excision repair
pbg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pbg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
122494898 (LIG1)
03410 Base excision repair
122494898 (LIG1)
03420 Nucleotide excision repair
122494898 (LIG1)
03430 Mismatch repair
122494898 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pbg03032
]
122494898 (LIG1)
03400 DNA repair and recombination proteins [BR:
pbg03400
]
122494898 (LIG1)
Enzymes [BR:
pbg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
122494898 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
122494898 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
122494898 (LIG1)
DNA replication proteins [BR:
pbg03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
122494898 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
122494898 (LIG1)
DNA repair and recombination proteins [BR:
pbg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
122494898 (LIG1)
NER (nucleotide excision repair)
Other NER factors
122494898 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
122494898 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
DDR
PucR
Motif
Other DBs
NCBI-GeneID:
122494898
NCBI-ProteinID:
XP_043456361
LinkDB
All DBs
Position
E2:9773224..9816324
Genome browser
AA seq
912 aa
AA seq
DB search
MQRSIMSFFHPKKEGKAKKPEKETSSRETEPPPKVALKERNGEVPENDSPVKRPGRKAAR
VLGSEGEEEDEALTPSKGQKPAPGSPQVSPPSPVTFPEGSPPLSNTSPAGLSPTGIPKRR
TARKQLPKRPIQDILEEQSKDEDREAKRKKEEAETPTESLTEPELAQKEEAEGDRPTTPA
EHLETSPAEPPTDSTSEPAVAGKQEAREGDQAKPPPRAPKTVSSFFAPRKPATKKEGKEE
GPGAPRKEEAKGPLDPSGYNPAKNNYHPVDDACWKPGQKVPYLAVARTFEKIEEVSARLR
MVETLSNLLRSVVALSPPDLLPILYLSLNRLGPPQQGLELGVGDGVLLKAVAQATGRQLE
SVKAEAAEKGDVGLVAENSRSTQRLMLPPPALTATGVFAKFRDIAGLAGSASTAKKMDVI
KGLFVACRHSEARFIARALSGRLRLGLAEQSVLAALAQAVSLTPPGQDFPPAVVDAGKGR
TAEARKTWLEEQGMILKQTFCEVPDLDRIIPVLLEHGLEHLPEHCRLSPGVPLKPMLAHP
TRGVSEVLKRFEEAAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGKYPDIISRIPK
VKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDAADIQVQVCLYAFDLIYLNG
ESLVREPLSRRRQLLRENFVQTEGEFVFATSLDTKDTDQIAEFLEQSVKDSCEGLMVKTL
DVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLAAYDEES
EELQAICKLGTGFSDEELEDHFQSLQALVLPTPRSYVRADGAVAPDHWLDPSAVWEVKCA
DLSLSPIYPAARGLVDSEKGISLRFPRFIRVREDKKPEEATTSAQVASLYKKQSHIQNQQ
GADLDSDPEDFY
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagtatcatgtcatttttccaccccaagaaggagggcaaagcgaaaaagccg
gagaaagagacctccagcagagagacagagccacctccaaaggtggcgctgaaggaacgg
aacggagaggtgcctgagaacgattctccagtgaagaggccagggcggaaggcggcccgg
gtcctgggcagtgaaggggaggaggaggatgaagccctcacgccctccaaaggccagaag
ccggccccaggctctccacaggtctcccctcccagccctgtcacatttcccgagggcagc
cctcccctctccaacacctctcctgcgggcctctccccaacggggatccctaagcggcgc
acagctcggaagcagcttcctaaacggccgattcaggatatcctggaagaacagagcaag
gatgaggacagagaggcaaagaggaagaaggaagaagcagagaccccaacagaaagcctc
acagagcctgaattggcccaaaaggaggaagcagaaggggaccggcccacgacgcccgct
gagcacttagagacctccccagccgagcccccgacagacagcacctcagagcctgcggtg
gccggaaagcaggaagcacgggagggggaccaggctaagcctccccccagagctcccaag
acagtcagcagtttcttcgccccccggaagccggcgaccaagaaagaagggaaagaagag
ggacctggcgcccctagaaaggaggaggccaaaggacccctggacccctccggctacaac
ccggccaagaacaactaccatcccgtcgacgacgcctgctggaagccgggccagaaggtc
ccttacctggctgtggcccggacatttgagaagattgaggaggtttctgctcggctccgg
atggtggagacactgagcaacttgctgcgctccgtggtggccctgtcccccccagacctg
ctccccatcctctacctcagcctcaaccgcctcgggccgccccagcagggcctggagctt
ggcgtcggggacggggtcctcctcaaggcggtggcccaggccacggggcggcagctggag
tccgtcaaggccgaggcggccgagaagggcgacgtggggctggtggccgagaacagccgc
agcacccagagactcatgctgcccccgcccgctctcacggccaccggggtcttcgccaag
ttccgagacatcgccgggctcgccggcagcgcttccacagccaagaagatggatgtcatc
aaaggcctctttgtcgcctgccgtcactcagaagcccgattcatcgccagagccctgagc
ggacggctacgcctcgggctggcagagcagtcggtgctggccgccctcgcccaggccgtg
agcctcacgccccccggccaagatttccccccggctgtcgtggacgctgggaagggccgg
acagcggaggcccggaagacgtggctggaggaacagggcatgatcctgaagcagacattc
tgcgaggtgcccgacctggaccgcatcatccctgtgctgctggagcacggcctggagcac
ctcccggagcactgcaggctgagcccaggggtccccctgaaaccgatgctggcacacccc
acccgcggtgtcagcgaggtcctgaaacgctttgaggaggcggctttcacctgcgagtac
aaatacgacgggcagagggcacagatccatgtcctggaaggcggggaggtaaagatcttc
agcaggaatcaggaagacaatactggaaagtacccggacatcatcagccgcatccccaag
gttaaactgccatcagtcacatccttcatcctggacacggaagccgtggcttgggaccgg
gaaaagaagcagatccagccgttccaagtgctcaccacccgcaagcgcaaggaggtggac
gcagcagacatccaggtccaggtttgtctatatgccttcgacctcatctacctcaatgga
gagtccctggtacgcgagcccctttcccggcgccgacagctgctccgggagaacttcgtg
cagacggagggcgagttcgtcttcgccacctctctggacaccaaggacacagaccagatc
gccgagttcttggagcagtccgtgaaagactcctgcgaggggctgatggtaaagaccctg
gacgtcgacgccacctacgagatcgccaagagatcacacaactggctcaagctgaagaag
gactacctcgatggcgtgggcgacaccctggacctcgtggtgatcggcgcctacctgggc
cgtgggaagcgggccggccgctacgggggtttcctgctggcggcctatgacgaggagagt
gaggagctccaggccatatgcaagcttggaactggcttcagtgacgaggagctagaggac
catttccagagcctccaggccctggtgctgcccaccccacgctcctacgtccgggccgac
ggcgccgtggcccccgatcactggctggaccccagcgccgtgtgggaggtgaaatgcgcc
gatctgtccctgtcccccatctaccccgctgcccggggcctggtggatagcgagaagggg
atctccctccgtttcccccggtttattcgcgtccgcgaagacaagaagccggaggaggct
accaccagtgcccaggtggcctctctgtataagaagcagagtcacattcagaaccagcag
ggcgcggacttagactccgacccagaagatttctactag
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