Caldimonas brevitalea: AAW51_2425
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Entry
AAW51_2425 CDS
T04216
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pbh
Caldimonas brevitalea
Pathway
pbh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pbh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AAW51_2425 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbh03400
]
AAW51_2425 (mfd)
Enzymes [BR:
pbh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AAW51_2425 (mfd)
DNA repair and recombination proteins [BR:
pbh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AAW51_2425 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
DUF4217
SNF2-rel_dom
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
AKJ29116
UniProt:
A0A0G3BP24
LinkDB
All DBs
Position
complement(2736239..2739682)
Genome browser
AA seq
1147 aa
AA seq
DB search
MHFPSIAPGKRYTLPRPPGSADALLLAQFARRQAEGKVLTAIVTAEPADAQRLHDELAFF
APELRCAVFPDWETLPYDTFSPHQDLISERLATLWRVRQGEVDVVLLPAATALVRLAPPS
FMAAYTFHFKQKEKLDEASLKAQLTLAGYQHVSQVVSPGEYAVRGGLIDLFPMGSTVPYR
VDLFGDEVDSIRTFDPDSQRSLYPVPEVRLLPGREFPMDEEARAQFRNRWRQRIEGDPSK
ARVYKDVGSGIATAGIEYYLPLFFDSTATIFEYLGDKAVLALHGEIDEALKRFWTDTRER
HRFLQHDPERPILPPEDLFLKAEDFFTLCNAHAQLAVRGSEASDWARPLPDLSAERGAQE
PLRKLQIHVGTTPHRVLLIAESAGRRESLLELLRDNRIEPPSVDSLAAFQAGDERFAIAV
APLAAGFHWLPEGQATGLQFITETELFATGPSTRRRRKQEQVSNVDALIKDLSELKVGDP
VVHVNHGIGRYQGLVNLDLGDGPTEFLHLVYADKATLYVPVAQLHLISRYTGVSPDEAPL
HRLGSGQWEKAKRKAAEQVRDTAAELLNLYARRAAREGYAFRFSPHDYEAFAASFGFEET
PDQNAAIHAVIQDLISPRPMDRLVCGDVGFGKTEVALRAAFVAVTGGKQVALLAPTTLLA
EQHYQTITDRFGNWPIKVAELSRFRSTKEINQALKGLADGTVDIVVGTHKLLSQDVKFAR
LGLLVIDEEHRFGVRHKEAIKAMRSEVDVLTLTATPIPRTLGMALEGLRDLSVIATAPQR
RLAIKTFVRNESSGTIREAVLRELKRGGQVYFLHNEVETIENRREKLHELLPEARIAVAH
GQMPERELERVMRDFVGQRYNVLLCSTIIETGIDVPTANTIVISRADKFGLAQLHQLRGR
VGRSHHQAYAYLLVPDVEGLTKQAAQRLEAIQNMEELGSGFYLAMHDLEIRGAGEVLGEH
QSGNMQEVGFQLYNDMLSEAVRSLKAGREPDLLSPLSATTEINLHAPALLPDSYCGDVHV
RLNLYKRLASADKLDQIDALLEEVTDRFGKLPPQGQTLFDVHRLRVLAKPYGVQKIDAGP
AATHITFRPNPPVEPLRIIELVQKNRHIKLAGNEKLRIEKATENPKDRVQYIRDVLRTLG
TPTPQPS
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgcacttcccctccatcgcgcccggcaagcgctacaccctgccccgcccgcccggttcg
gccgacgccttgctgctggcgcagttcgcgcgccgacaggccgagggcaaggtgctcacc
gccatcgtcacggccgagccggccgacgcgcagcggctgcacgacgagctggccttcttc
gcgcccgagttgcgctgcgccgtgtttcccgactgggaaacactgccctacgacactttc
tcgccgcaccaggacctgatctccgaacgcctggccaccctgtggcgcgtgcgccagggc
gaggtcgacgtggtgctgctgccggccgccaccgccttggtgcggctggcgccgccgtcg
ttcatggcggcctacacctttcacttcaagcaaaaggaaaagctcgacgaggcgtcgctc
aaggcgcagctgacactggccggctaccagcacgtgagccaggtggtgtcgccgggcgaa
tacgcggtgcgtggcggcctgatcgatctgttcccaatgggctcgaccgtgccttaccgc
gtcgacctgttcggcgacgaggtcgattcgatccgcaccttcgaccccgacagccagcgc
agcctctacccggtgcccgaggtgcggctgctgcccggccgcgagttcccgatggacgaa
gaagcacgggcgcagtttcgcaaccgctggcgccagcgcatcgagggcgacccgagcaag
gcgcgcgtctacaaggacgtcggcagcggcatcgccaccgccggcatcgagtactacctg
ccgctgttcttcgacagcaccgcgaccatcttcgaatacctgggcgacaaggcggtgctg
gcgctgcacggcgagatcgacgaggcgctcaagcgcttctggaccgacacgcgcgagcgc
catcgttttctgcagcacgaccccgagcggcccatcctgccgccggaagacctgttcctg
aaggccgaggacttcttcaccttgtgcaatgcgcacgctcagttggccgtgcgcggcagc
gaggcgagcgactgggcccggccgctgcccgacctgtcggccgagcgcggcgcgcaggag
ccgctgcgcaagctgcagatccacgtcggcaccacgcctcaccgggtgctgttgatcgcc
gaatccgccgggcgccgcgagagcctgctcgaactgctgcgcgacaaccgcatcgagccg
cccagcgtcgattcactggcggcgttccaggccggcgacgaacgtttcgcgatcgcggtc
gcaccgctcgcggccggcttccactggctgcccgagggccaggcgaccggcttgcagttc
atcaccgagaccgagctgttcgccaccggccccagcacccggcggcgccgcaagcaggag
caggtcagcaacgtcgacgcgctgatcaaggacctgtcggagctgaaggtcggcgacccg
gtggtgcatgtcaaccacggcatcggccgctaccagggcctggtcaacctcgacctcggc
gacggcccgaccgagttcctgcacctggtctacgccgacaaggcgacgctctacgtgccg
gtggcccagctgcacctgatcagccgctacaccggcgtcagccccgacgaggcgccgctg
cacaggctgggctcgggccagtgggaaaaagccaagcgcaaggccgccgaacaggtgcgc
gacacggccgccgaactgctcaacctgtatgcccgccgagcggcccgcgaggggtatgcg
ttccgcttctcgccgcacgactacgaggccttcgccgccagcttcggtttcgaggaaacg
cccgaccagaacgccgccatccacgccgtcatccaggacctgatctcgccgcgcccgatg
gaccgcctggtgtgcggcgacgtcggcttcggcaagaccgaggtggcgctacgcgccgcc
ttcgtcgccgtcacgggcggcaagcaggtggccttgctcgcccccaccacgctgctggcc
gagcagcactaccagaccatcaccgaccgcttcggcaactggccgatcaaagtggcggag
ctgtcgcgctttcgctcgaccaaagagatcaaccaggcgctcaagggtttggccgacggc
acggtcgacatcgtcgtgggcacccacaagctgctgtcgcaggacgtcaagttcgcgcgg
ctggggctgctggtcatcgacgaggagcaccgcttcggcgtgcgccacaaggaggccatc
aaggcgatgcgctccgaggtggacgtgctcacgctcaccgccacgccgatcccgcgcaca
ctgggcatggcactcgagggcttgcgcgaccttagcgtgatcgccaccgcgccgcagcgg
cgcctggccatcaagaccttcgtgcgcaacgagagcagcggcaccatccgcgaggcggtg
ttgcgggagctgaagcgcggcggccaggtctacttcctgcacaacgaagtcgagaccatc
gagaaccggcgcgagaaactgcatgagctgctgcccgaagcccgcatcgcggtggcccac
ggccagatgcccgagcgcgagctggaacgcgtgatgcgcgacttcgtcggccagcgctac
aacgtgctgctgtgctcgaccatcatcgagaccggcatcgacgtgccgaccgccaacacc
atcgtgatctcgcgcgccgacaagttcggcctggcccagctgcaccagctgcgcggccgt
gtcggccggtcgcaccaccaggcctacgcgtatctgctggtgcccgatgtcgaaggcctg
accaaacaggcggcccagcgcctggaagcgatccagaacatggaagaactcggctccggc
ttctacctcgcgatgcacgacctcgagatccgcggcgccggcgaggtgctgggcgagcac
cagagcggcaacatgcaggaggtcggcttccagctctacaacgacatgctgagcgaggcg
gtgcgctcgctcaaggccggtcgcgagccggatctgctgtcgccgttgtcggccaccacc
gagatcaatctgcatgcgccggccttgctgcccgacagctattgcggcgacgtgcacgtg
cgtttgaacctctacaagcgcctcgcgtcggccgacaagctcgaccagatcgacgcgctg
ctcgaagaggtgaccgaccgcttcggcaagctgccgccgcaaggccaaacgctgttcgac
gtgcaccggctgcgggtgctggccaagccgtatggcgtgcagaagatcgacgccgggccg
gccgccacccacatcaccttccggcccaacccgccggtcgagccgctgcgcatcatcgag
ctggtgcagaagaaccgccacatcaagctggccggcaacgagaagctgcgcatcgaaaaa
gccaccgagaaccccaaggaccgcgtccagtacatccgcgacgtgctgcgcaccctgggc
acgccgacgccgcagccgagttga
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integrated database retrieval system
