Caldimonas brevitalea: AAW51_3125
Help
Entry
AAW51_3125 CDS
T04216
Symbol
ligD
Name
(GenBank) bifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pbh
Caldimonas brevitalea
Pathway
pbh03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pbh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AAW51_3125 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbh03400
]
AAW51_3125 (ligD)
Enzymes [BR:
pbh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AAW51_3125 (ligD)
DNA repair and recombination proteins [BR:
pbh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AAW51_3125 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
DNA_ligase_OB_2
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AKJ29816
UniProt:
A0A0G3BR42
LinkDB
All DBs
Position
3653110..3655731
Genome browser
AA seq
873 aa
AA seq
DB search
MGRDHPLSAYHAKRDFAHTPEPAGEKRVAKRRGKAVQPALQFVIQRHHARRLHYDFRLEW
GGTLKSWAVPRGPSLDPDIQRLAVEVEDHPLDYAGFEGTIPKGHYGAGDVAIWDRGEWIP
EGDAEEGLRRGKLHFELRGTRLHGAWVLFRLAGEGDQWMLRKRRDQHARIGDGDAVLHDP
PEAEAPPAPAPAPVAAKSPRSSAASSRRRRVPVPEFVEPQLATLVDRPPVSDAWVYEIKY
DGYRMLVRCDGRQVRLFSRNGIEWTERLPSLVQRLSALQSHSGWLDGEIVVMDEHGHTDF
HALQATLDSGAPQVEYVVFDVPWWDGEDLRDRPLSHRLQALDEIFAALPAQPGLSRSKPL
DPGYVGQAVLQAACQLGLEGLIGKRLDAPYRSGRSPHWIKLKCRSEQEVVIGGYTEPRGS
RGHLGALLVGVWGKDGQLDYAGRVGSGFDQAGLQAMRERLAPDETARCPFRSKPSLPGAP
TVHWVEPVHVVQVRYASWTQEGLLRQASFVGVREDKPVRKVVRELPQTVAQEDTPMRPSA
TRLAGRPASPAATAARASLRRSGASSDPKANSVGGVRVTHPERLVFSVPRITKLEVVRYH
EDIGEYLLPHLAARPLSLLRCPQGTGGECFFQKHVETTLPSGVESVEVPASDGTDTLVMV
NSVEGIVALAQYGNVEFHTWGARAPRPDRPDRITMDLDPDPDLPWAQVVEAAQLTRVLLE
ELGLAAFLKTTGGKGLHIVTPIKATRSWDEVKAFTKGLASRLASVAPQRFTARLSKSSRG
GRIFIDYLRNGRGATAVASYSLRAREGAPVSVPLHWDELSAKKDVRAEHFNLRNAVARAP
ESETAWQDYAAQRRTLTVKMFRALGVDPGSAES
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atgggccgcgaccatcccctgtcggcctaccacgccaagcgggacttcgcgcacacgccc
gaacccgccggtgaaaagcgcgtcgcgaaacggcgcggcaaggccgttcagcccgccctg
cagttcgtcatccagcgccaccatgcacggcgactgcactacgacttccggctcgaatgg
ggtggcaccctgaagagctgggcggtgccgcgcggacccagcctggaccccgacatccag
cgcctcgcggtcgaggtcgaggaccatccgctcgactacgccggcttcgagggcacgatc
ccgaagggccactacggtgccggcgacgtcgccatctgggaccgtggcgagtggataccc
gaaggcgacgccgaggagggtctgcgccgcggcaagctgcacttcgaactgcgcggcacc
cggttgcacggcgcctgggtgctgttccgcctggcgggcgaaggcgatcaatggatgctg
cgcaagcggcgcgaccagcatgcgcgcatcggcgacggcgacgcggtgttgcacgacccg
cccgaggccgaggccccgcctgcgccggcccctgccccggtggccgccaaatcaccgcgc
agcagcgcagcgtcgagccgtcgccgccgcgtcccggtgcccgagttcgtcgaaccgcaa
ctggccacgctggtcgaccggccgccggtcagcgacgcctgggtctacgagatcaaatac
gacggctaccgcatgctggtgcgctgcgacggccgccaggtgcgcctgttcagccgcaac
ggcatcgagtggaccgagcggctgccgtcgctggtgcagcggctgtcggccttgcaaagc
cacagcggctggctcgacggcgagatcgtcgtgatggacgagcacggccataccgacttc
catgcgctgcaagccacgctcgacagtggcgcgcctcaagtggagtacgtggtcttcgac
gtgccgtggtgggacggcgaagacctgcgggatcggcccctgtcccaccgtctgcaggca
ctcgacgaaatcttcgcggcgctgcccgcccagccaggtctgagccgcagcaaacccttg
gacccggggtacgtcggccaggccgtgctccaagcggcctgccagctgggcctggagggt
ttgatcgggaagcgtctggacgcgccctaccgcagcggtcgttcgccccattggatcaag
ctcaaatgccgctccgagcaggaagtcgtgatcggcggctacacggagccgcgcggcagc
cgcgggcacctcggggcgctgttggtcggcgtgtggggcaaggacggccagctcgactat
gccgggcgcgtcggcagcggcttcgatcaggccgggctgcaggcgatgcgcgagcggctg
gcacccgacgagacagcgcgctgccccttccgcagcaagccgtcactgcccggcgcgccg
acggtgcattgggtcgagccggtccatgtggtacaggtgcgttacgccagctggacccag
gagggcctgctgcgtcaggcttcgttcgtcggtgtgcgcgaagacaagccggtgcgcaag
gtggtgcgcgaattgccgcagacggtggcacaggaggacaccccgatgcgcccgagcgcc
acccgccttgccggccgccccgccagccctgccgccaccgcggcacgcgcttcgttgcgc
cgcagcggcgccagcagcgatccgaaggccaacagcgtgggcggcgtgcgcgtcacccac
cccgagcgtctggtgttcagcgtgccgcgcatcaccaagctcgaggtggtgcgctaccac
gaagacatcggcgagtatctgctgccccatctggcggcgcgccccttgagtctgctcagg
tgtccgcagggcaccgggggcgaatgcttctttcagaaacacgtcgagaccaccttgccg
agtggcgtcgaaagcgtggaagtcccggccagcgacggcaccgacacgctggtgatggtc
aacagcgtcgaaggcatcgtcgcgctggcgcagtacggcaatgtcgagttccatacctgg
ggcgcgcgagcgccccggcccgaccgccccgaccgcatcacgatggacctcgaccccgac
ccggacctgccgtgggcgcaggtggtcgaagcggcccagctgacccgggtgctgctcgaa
gaactgggactggcggccttcctgaagaccaccggcggcaagggcctgcacatcgtcacg
ccgatcaaggcgacgcgcagctgggacgaggtcaaggccttcacgaaaggcctggcctcg
cggctcgccagcgtcgcgccccagcgtttcaccgcccggctgtcgaaatcgagtcgcggc
ggccgcatcttcatcgactacctgcgcaacgggcgcggcgccaccgcggtcgcgtcctac
tccttgcgcgcacgtgaaggcgcccccgtctcggtgccgctgcactgggacgagctgtcg
gccaagaaagacgtgcgggccgagcatttcaaccttcgcaacgccgtggcccgggcgccc
gagtcggaaaccgcgtggcaggactacgcggcacagcggcgcacgctgacggtcaagatg
ttccgtgcgctcggcgtcgaccctggcagcgcagagtcatag
DBGET
integrated database retrieval system
