Python bivittatus (Burmese python): 103068004
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Entry
103068004 CDS
T03091
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pbi
Python bivittatus (Burmese python)
Pathway
pbi03013
Nucleocytoplasmic transport
pbi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pbi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
103068004 (UPF1)
03015 mRNA surveillance pathway
103068004 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbi03019
]
103068004 (UPF1)
Enzymes [BR:
pbi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
103068004 (UPF1)
5.6.2.5 RNA 5'-3' helicase
103068004 (UPF1)
Messenger RNA biogenesis [BR:
pbi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
103068004 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
103068004 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
103068004
NCBI-ProteinID:
XP_025023763
UniProt:
A0A9F5IYI9
LinkDB
All DBs
Position
Unknown
AA seq
1091 aa
AA seq
DB search
HSHPQPPPGGGSGSGGGAAAPGTPGLPGGGVGAGAGGAPSVVAPGQLDAQVNGPDGILQN
GAVDDNVPKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSKKWFCN
GRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKADSVVV
LLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKLE
ELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQ
DNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDN
YGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLL
GHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIV
YHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIR
NMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLA
KMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFE
RLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPM
FFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQY
MQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRA
RYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPG
ARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQIGMISAGPSHVTTMNIPIPFN
LVMPPMPPPGYFGQANGPAAGRGNLKGKTGRGGRQKNRFGIPGASQSNLPNSQASQDVVS
QPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERA
YQHGVTGLSQY
NT seq
3276 nt
NT seq
+upstream
nt +downstream
nt
cacagccacccccagccgcctcccgggggaggctccggcagcggaggaggcgccgccgcg
ccgggcaccccaggtctcccggggggtggcgtaggagcgggcgcggggggggcgccttcc
gtcgtcgcgccagggcagctggacgcccaggtaaatggaccagatggcatcctccagaat
ggggcagtggatgataatgtgcctaaaaccagccaacttcttgcagagctcaattttgaa
gaagatgaagaagacacttactacaccaaggaccttcctgtgcatgcctgcagctattgt
ggcatccacgacccagcttgcgtggtctattgtaacaccagcaagaagtggttctgcaat
ggacgtgggaatacatctggcagccacattgtgaaccatcttgtgagagccaagtgtaaa
gaagtgactcttcataaggatggtcctctgggtgagactgtcttggagtgttacaattgt
ggctgtcgtaatgtgtttcttcttggtttcatcccagccaaggctgactctgtggtcgtt
ttgttatgcaggcagccttgtgccagccagagcagcttaaaggacatcaattgggacagc
tcacagtggcagcctttgattcaggatcgctgcttcctttcctggctggtcaaaattcct
tcagaacaggagcaactgagggcacggcagatcacagctcagcaaattaacaagctagaa
gaactctggaaggagaacccatctgccactttggaggacctggaaaagcctggcgttgat
gaagagccacagcatgtcctccttagatacgaggatgcttatcaataccaaaacatcttt
ggtcctctggtcaagcttgaagcagactatgacaagaaattgaaggaatctcagactcaa
gacaacattactgtgagatgggatcttggtttgaacaagaaaaggattgcctacttcacc
ttgccaaagacagattcagatatgcgtttgatgcagggagatgagatctgcctgagatac
aaaggggacttggccccgctctggaaaggaatcggccatgttattaaagttcctgataat
tatggtgatgaaattgcaattgagctgagaagtagtgttggtgcccctgtggaagtgact
cacaacttccaagtggattttgtatggaaatcaacatcctttgatagaatgcagagtgcc
ctaaaaacatttgctgtggatgaaacatctgtttctggctacatctatcacaaacttctg
ggtcatgaggtggaagatgtcattattaaatgtcagttgccaaagcgcttcacagcacag
ggacttcctgacctcaaccattctcaggtgtatgcagtgaagactgttttgcaacgtccc
ttgagtcttattcagggcccccctggcacaggcaagactgtaacatcagccacaattgtg
tatcacctggctagacaaggaaatgggcctgtactggtttgtgccccaagtaacattgct
gtggaccagctgacagaaaaaatacatcagacggggctgaaagtggtgcgcctgtgtgca
aagagccgtgaggccattgattcacctgtctctttcttagcactgcataatcagatcagg
aatatggatagcatgccagagctccagaaactgcagcagctgaaagatgagactggggag
ctgtcatccgctgatgaaaagcgctaccgagcacttaaacgaacagctgagcgggaattg
ctaatgaatgcagatgtcatttgctgcacgtgcgtcggagctggcgatccaagacttgca
aaaatgcagtttcgttccattttgattgatgaaagcacacaggccactgagccagagtgc
atggtgccagtggttcttggggcaaaacagttgatcctcgtgggcgatcattgtcaactt
ggccctgtcgtaatgtgcaagaaggcggctaaagcaggcctgtcgcagtccctctttgag
cgactggtggtgctgggcatccggcccattcgcctgcaagtccaataccgcatgcaccca
gccctgagtgcttttccttccaacatcttttacgaagggtcactccagaatggtgtcact
gcagcagaccgtgtgaagaagggatttgacttccagtggcctcagccagacaagcccatg
tttttctatgtgacccaagggcaagaagaaattgcaagttctggcacttcttatttgaac
agaacagaggcagccaatgtagagaaaataaccactaagctactgaaggctggtgcaaag
ccagatcagattggtatcatcacaccctatgagggacagcgttcctacttggtgcaatat
atgcagtttagtgggtctttgcataccaagctttatcaggaagttgaaattgctagcgtt
gatgctttccaagggcgagaaaaggactttattatcctctcctgtgttagagctaacgaa
catcaaggcattggcttcttgaatgaccccaggcgtctcaatgtggctctcacaagagca
aggtacggcgtcattatcgttgggaatccaaaggcactctccaagcaacctctctggaat
caccttctgaactactacaaggagcaaaaggtcctggttgagggaccactgaacaatctc
cgtgagagcctcatgcaattcagcaagcctcgaaaattggtcaacactatcaatcctgga
gcccgattcatgacaactgctatgtatgatgcccgtgaagctattattcctggatcagtt
tatgatcgcagcagccaaggccggccatccaacatgtatttccaaacacatgatcagatt
ggaatgatcagtgctggacccagtcatgtcaccaccatgaacattcccatcccattcaac
ttggtgatgcctcccatgcctccaccagggtactttggacaggccaatggaccagctgct
ggtcgtggaaacctgaaaggcaaaactggccgtggtgggcggcagaagaatcgttttggg
attccaggagctagccagtcgaacctccccaacagccaggccagccaagatgtggtctcc
cagcctttctctcagggtcctttgactcagggttacatctccatgagccaaccctctcag
atgagccagcctggcctctcccagccagaattatcacaggatagttaccttggtgatgag
tttaaatctcagattgacgtggccctgtcgcaggattcgacttaccagggggaacgcgca
tatcaacatggagtgacggggctgtcacagtattag
DBGET
integrated database retrieval system
