Paenibacillus beijingensis: VN24_01630
Help
Entry
VN24_01630 CDS
T03802
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
pbj
Paenibacillus beijingensis
Pathway
pbj03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pbj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
VN24_01630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbj03400
]
VN24_01630
Enzymes [BR:
pbj01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
VN24_01630
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
VN24_01630
DNA repair and recombination proteins [BR:
pbj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
VN24_01630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Dak1
Motif
Other DBs
NCBI-ProteinID:
AJY73565
UniProt:
A0A0D5NEH5
LinkDB
All DBs
Position
complement(348493..349371)
Genome browser
AA seq
292 aa
AA seq
DB search
MPELPEVETVKRTLNELVTDKTIAAVTVSLPRIIQRPAEPEQFAGALAGRTIRTVERRGK
FLRLILDGLVLVSHLRMEGRYGLYRTGEPVDKHTHVIFHFQDGTELRYKDVRQFGTMHLF
EPGEDLMLPPLNKLGLEPLEEEFTPEALRGRLKGKTSKMKPLLLNQSYIAGLGNIYVDEA
LFQAGIHPEAGVDELKPSDWKKLYASIRSTLERAVEAGGSSVKSYVNGQGDAGSFQHELL
VYGRKNEPCRSCGTLITKSVVGGRGTHVCLQCQPLPHSLRIASKQQRLSVIK
NT seq
879 nt
NT seq
+upstream
nt +downstream
nt
atgccggaattgccggaggttgaaacggtaaaacgcacattgaatgagcttgtgacggat
aagacgatcgctgcggtaaccgtctcgctgccgcgcattattcagcgccccgcagagccg
gagcagtttgcaggcgcccttgccggccggacgatccggacggtggagcggcgggggaag
tttttgcgactgatactcgacggtctcgtgctcgtgtcgcatcttcgaatggaaggccgc
tacggcttgtaccgaacgggggagccggtcgataaacatacccatgtcatttttcatttt
caagacgggaccgagctgcgctacaaggatgtccgccagttcggcacgatgcatctgttc
gagcccggagaggatcttatgcttccgccgctgaacaagctcggactggagccgctggag
gaggagtttacgccggaggcgctgcgcggcagattgaagggcaagacgtcgaaaatgaag
ccgctattgctgaaccagtcctatatcgccggacttggcaatatatatgtcgatgaagcg
ctgtttcaggcgggcatccatcccgaagcgggtgttgacgagcttaagccttccgactgg
aaaaagctttacgcgtctattcgcagcacgctcgagcgcgcggtggaagcgggcggttcg
tccgttaagtcctatgtgaacggtcaaggcgacgccggatcgttccagcacgagctgctg
gtttacggccgcaaaaacgagccgtgccgcagctgcggcacgctcatcacgaaatcggtc
gtcggcggacgcggcacgcatgtttgtttgcaatgccagccgctgccgcacagtctgcga
atcgcttcaaagcagcaacggttatcggttatcaagtag
DBGET
integrated database retrieval system
