Paraburkholderia bonniea: QS306_06360
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Entry
QS306_06360 CDS
T09664
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
pbon
Paraburkholderia bonniea
Pathway
pbon03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pbon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
QS306_06360 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbon03400
]
QS306_06360 (recB)
Enzymes [BR:
pbon01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
QS306_06360 (recB)
DNA repair and recombination proteins [BR:
pbon03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
QS306_06360 (recB)
BRITE hierarchy
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
PDDEXK_1
UvrD_C_2
AAA_11
Motif
Other DBs
NCBI-ProteinID:
WJF91251
LinkDB
All DBs
Position
1:1453422..1457222
Genome browser
AA seq
1266 aa
AA seq
DB search
MSGLTAGFIASQAAGAQEQELDVFACALEGVNQIEASAGTGKTWNICALYVRLLLEQRLN
ADQILVVTFTKAATAELHERIRARLTQLLRALETGADDDDPFLVRLFDTTLALQGGVERE
MAQKLVRRALGTFDQAAIHTIHAFCQRALQEAPFAAAMPFAFEMDADDAALRFELAADFW
REQVEPVAAAHPAFAAWLVARRAGPAALDVQLGRRLKKPLAQLRWGFSGMPETVGHADAE
PQARFAALHALWLAQRAVLADLLAAAAASLSRTSHKPEAVSAAFAAWDDYFAQGQHYEAP
PRAALKLTASALAKATKVRHEPPEHAFFTLADEFSAAVLAADELQQRRWLTLLQRWLEHA
PTELAARKRARRVVSFDDLLSNLFHALAAHPWLASALRARYPAALIDEFQDTDPLQFSIF
NRIFAPDGPLFLVGDPKQAIYSFRAADLHTYLAARAAATMRYTLALNQRSSAPVVAACNQ
IFSANPDGFVLEGLKYQPVRAGQRLRVPLSDTATAWPFAAESSVAPADGFRLWMLPEGAE
VLSKRDAQHAASTACAAEIVRLLRGAREGTVRLGEMSLAPGNIAVLVQTHRQGSLVKAIL
AQWGVGSVELAQASVFATPEAEQIERVLHAIETPGDLRRLRSALSTDWIGLDALTLWQQQ
ASEAAAPVAALESTFEAAQALDAMAWVERFSRYRALWRERGFAVMWRTLLRELGIAQQLA
AGADGERRLTNASHLAELLQARVAAQPGIAPTLRWFAAQRAQGGGEEAQLRLESDRNLVQ
IVTVHKAKGLEYAVVFCPFLNDGALREPPASGLPDAREYHDETGAAVLHYGCDDDQAERA
ANAARREQAAERVRLAYVALTRAVYRCYVVGGPYLIARSTKESRRSVLNWLMAGNGYAID
DWLAEPPDESTLAQRWRDLAHGPLTLEALPIPERCIPLEPQQVGNGAIQARTSHRLVREA
WRMASFSGMIAAGARMGQGAGQNAGPAAVPGLADDSHPDHDQIAASLTSARALAPAALTL
AADDILGFPRGPAAGECLHRMFELADFSDPATWPEAIQRALRERPVTASPALALRLPLMM
QSLLADVSAAELVPGMQLRQLDSARRLNELAFLFPARALDFNALRAGLSVAGYPGVALEA
GMLRGFVKGFIDMVVEHDGRFWIIDWKSNHLGETAADYAAAPLDNAMAQHAYHLQALLYT
LALHRYLKIRVSGYTYETHLGGYLYLFVRGVRPTWRDADGAAGVHARRPDAALITWLDGL
MDGVAP
NT seq
3801 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcttgacagcgggcttcatagcgagccaggcagcgggcgcacaggaacaggag
ctggatgtctttgcctgtgcactcgaaggcgtgaaccagattgaggcctcagccgggaca
ggcaagacttggaacatttgcgcgctctatgtgcgtttgctgctcgaacagcgcctgaat
gctgaccagattctggtcgtcaccttcaccaaagccgctacagctgaattgcacgaacgg
attcgcgcccgtttgacacaactgctacgcgcgcttgaaaccggcgctgacgatgacgat
ccgtttctcgtccgcctcttcgacaccacgctcgcgctgcaaggcggggttgagcgcgag
atggcgcaaaagctcgtccggcgtgcgcttggcacctttgaccaggcggcgattcacacc
atccacgcgttttgccagcgcgcgctgcaagaagcgccgtttgctgcggccatgccattt
gcgttcgaaatggacgctgacgatgccgcgctgcgctttgaactagcagcggatttctgg
cgtgaacaggtggagccagtcgccgcggcacacccggccttcgctgcatggctggtggcg
cggcgggctggcccggcggcgcttgatgtgcaattggggcggcgtttgaaaaagccactg
gcgcaattgcgctggggcttcagtggcatgccagaaaccgttggacacgctgacgctgag
ccgcaggccagatttgccgcattgcacgcgctgtggctcgcgcaacgggctgtgctggcc
gatctgctggccgcagccgcggcgagcctgagccgcacctcgcataaaccagaagcagtg
agcgccgcatttgcggcatgggacgactactttgcccagggccagcactacgaagccccg
ccacgggcagcgttgaagctgacagccagtgcactggcgaaagccaccaaagtgcgccat
gaacctccagagcatgcttttttcacgctagccgacgagttcagcgccgccgtgcttgcc
gccgatgagttgcagcaacggcgctggctgactttgctgcagcgctggctcgaacatgct
ccgacggagctggcggcgcgcaagcgggctcggcgggtggtgtcgttcgatgacttgctg
tcgaatctgtttcatgcgctcgcggcgcatccgtggctcgctagcgcgttgcgcgcgcgc
tacccggcagcgctgattgacgagtttcaagacaccgatccgctccagttttcgattttc
aaccgcatctttgcgccagatggccctctctttctggtgggtgatccgaagcaggccatc
tacagttttcgggccgccgatctgcatacctatcttgcggcgcgtgcggcagcgaccatg
cgttacacgctagcgctcaaccagcgctccagcgcaccggtcgtcgcggcctgcaaccag
atattcagcgctaacccggatggctttgtgcttgaggggttgaagtaccagccggtgcgt
gccgggcagcggctacgtgtgcctctgtctgacacggctacggcatggccttttgctgct
gaatcctccgtcgcacccgccgacggttttcgtctctggatgctgcctgaaggcgcagag
gtcttaagcaaacgcgacgcacagcacgcagcgagtaccgcctgcgcagctgagatcgtg
cgtctgttgcgcggcgcacgcgaaggtaccgtgcgtcttggagagatgtcgctggcaccc
ggcaatatcgcggtgctggtacagacccatcgccagggcagcctggtgaaagcgatcctg
gcgcaatggggcgtgggcagcgttgagctggctcaagcatctgtctttgccacgccagag
gctgagcagatcgaacgcgtgctccatgcgattgaaaccccgggcgacttgcgccgcctg
cgctcagcactctctaccgactggattgggctcgatgcgctgacgctgtggcagcaacag
gcgagtgaggcagctgcccccgttgccgcgcttgaatctacgttcgaggcagctcaggcg
ctggatgcgatggcttgggtcgaacgcttttcgcgttatcgcgcgctttggcgcgagcgc
ggtttcgcggtgatgtggcgcaccctgctgcgcgaactgggcatcgcgcagcaacttgcg
gcgggagccgatggcgagcgccggctgaccaacgccagccacctggccgaactgctgcaa
gcccgcgtcgcggcgcagcccgggattgcgccgacgctacgctggttcgccgcgcaacgc
gcgcagggcgggggggaagaagctcagttacggctcgaatctgaccgcaacctggtgcag
atcgtgaccgtgcacaaagccaaaggactggaatatgcggtggtgttttgcccatttttg
aatgacggcgcgttacgcgagccacctgcgtcaggattgcccgacgcccgcgaataccac
gatgaaaccggtgcagctgtgctgcattacggctgcgatgacgatcaggcggaacgtgcc
gcaaacgccgccaggcgagagcaggccgctgaacgggtacggctggcgtatgtcgcgctg
acccgggcggtgtaccgctgctacgtggtgggcgggccctatctgattgcccgttcgacc
aaagaatcgcgccgcagcgtgctgaactggctgatggcaggaaacggctatgcgattgac
gactggttggccgagccacccgacgaaagcacgctggcacaacgctggcgtgatctggcg
catggtccgctgacgctagaggcgttgcccatacctgagcgctgcattccgcttgagccg
cagcaggtgggcaacggcgcgatccaggcgcgcacgagccaccggctggtgcgtgaagcc
tggcggatggcgagttttagcggaatgatcgcggcgggcgcgcgtatgggacaaggtgcg
gggcagaatgcagggcctgctgcggtgcctgggctggcggacgacagccatcctgaccac
gaccagattgcggcgagcctgacgtcggcgcgagccttggcaccagccgcgctaacgctg
gcagccgacgacatcctcgggttcccacgcggcccagccgcaggtgaatgcctgcacagg
atgttcgagctagccgatttttctgacccggcaacctggccggaagcgattcaacgtgcg
ttgcgggagcggcctgtcacggcgtcacccgcgctggcactccgtttgccgctgatgatg
cagagcctgctggccgatgttagtgcggccgagctagtgccgggcatgcagctcaggcaa
cttgacagcgcccgcaggctcaatgaactggcctttctgtttcctgcccgagctcttgat
ttcaacgcattgcgtgcagggctgagcgtcgcgggctaccccggcgtagcacttgaagcg
gggatgctgcgtggcttcgtcaaaggctttatcgacatggtggttgagcacgatggacgt
ttctggatcattgactggaaatccaaccatcttggcgaaacagccgccgactacgccgcc
gcgccgctagataacgcaatggcgcagcacgcatatcacctgcaagcgttgctctatacg
ctggcgttgcatcgctacctgaaaatccgggtaagcggctacacctacgaaacccatctt
ggaggctatctgtatctgtttgtgcgaggggtgcggccgacgtggcgtgatgccgatgga
gcggcgggagtgcatgcacggcgtccggatgccgcgctgattacctggttagacggcttg
atggatggagtggcaccatga
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