Peptostreptococcaceae bacterium oral taxon 929: C3V37_00530
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Entry
C3V37_00530 CDS
T05383
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pbq
Peptostreptococcaceae bacterium oral taxon 929
Pathway
pbq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pbq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C3V37_00530 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbq03400
]
C3V37_00530 (mfd)
Enzymes [BR:
pbq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C3V37_00530 (mfd)
DNA repair and recombination proteins [BR:
pbq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C3V37_00530 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
DUF924
RecG_dom3_C
UB2H
AAA_22
MFD_D3
Por_Secre_tail
Motif
Other DBs
NCBI-ProteinID:
AVM66418
UniProt:
A0A2P1G2A1
LinkDB
All DBs
Position
115740..119216
Genome browser
AA seq
1158 aa
AA seq
DB search
MDILQKGLLAFQYKDIVKDVKNALSPIFINGLVEEAIGVSVKTIQDETNTSSIIITYDEA
RARRIYEDLKNSHANVYYLKKREMLFYNVSDSSLETEYSRIQTLMSVLKDKNSILIMDVK
TLDEELISQDIYKSLSFSLKTSQVVNIDELTSSLTELGYKRASIASNKGEFALRGSIVDI
FDSISDMPFRIEFFSDEIDSIRIFDKDTQKTIATTEEIIINPAREILILDKYKKNIIDNL
KKDFDKTKEANKSSYSLMNEKFKEYFEMLKEDSFDKNRSLLLRYIPDKFKCGIFDYFDEN
TYIYLDESKRLEEEYDKYINFHSQEMESLYKNGEILLKEFNAIMSYGDVLNRIKKNNLVL
LSNILLNTKDFNPKAIYNLHLNSVTKYNSKYEALLDDLRHYKLRGYKILLSIKDIERYDR
IYSLLKDNDIAFIQEDEVDDKILSNQLLLRNDSSTRGFVFSENKFIVLSENDIYGSQKEK
LRKKKSSKKLDISDISEGTYIVHEDHGVGIYKGIVKLEVLGVKKDFLYIQYKGEDKLYVP
IAQMDRIQKFSDKDSKDVKINKLSTNDWIKQKSKSKKAIEKMAEDLVELYAIRKEKEGYA
FSKDTAWQRDFEESFPYEETKGQLEAIIDIKRDMESNKPMDRLLCGDVGFGKTEVALRAA
FKAIMDGKQVAFLCPTTILCQQHYETIIERFNKYPIRSAMMSRFRTSKEQKQTAEELKTH
SIDIVVGTHRLLSDDVRFKDLGLLIIDEEQRFGVRDKEKIKKLKENVDVLSLSATPIPRT
MHMALSGIRSMSVIEEAPQDRYPIQTYVLEYNKSLVRDAILKEMDRDGQVFFVFNNVENI
DKMYNELQNLVPEARIAIGHGQMTESKLEKVMMDFMYHKYDVLLSTTIIETGLDIPNANT
IIVYNSENMGLSQLYQLRGRVGRMNRIAYGYFTYKENKVLTETQEERLKAIKEFTELGSG
YKIAMRDLQIRGAGNLLGTSQHGHIAAIGYDLYIKYLNLAIKKLRGYEVKEDIDTRVDIT
VDAYIPDDFAPDEYIKMDLYKKIAAVENEEMKSELIDEIVDRFADIPKSIVNLIDISEIR
SMAKEFSITSINEVGGDFRIEFLNDKVINPQWIADIYKKYKNRLYINKRYMNVIRISIEG
ENKIKLIKDILILFKMSK
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atggatattttacaaaaaggcttattagcttttcaatacaaagatatagttaaggacgtt
aaaaatgctttaagtcctatatttataaatggtcttgtagaagaagctataggtgttagc
gttaaaactatccaagatgaaacaaatactagttcaatcatcatcacatatgatgaagca
agagcaagaagaatttatgaggatttaaaaaattctcatgccaatgtatattatttaaaa
aagagagagatgcttttttataatgttagcgactcctctttagaaactgaatattcaagg
atacagacgcttatgtctgtactcaaggacaaaaactctatcttgataatggatgtaaaa
actcttgatgaagagcttatcagtcaagatatctacaagagcctaagttttagcttaaag
actagtcaagtcgttaatatagacgaattaactagttctttaactgagcttggatacaaa
agagcaagtatcgcctctaataaaggtgagtttgctcttagaggctctattgtggatata
tttgactcgatttctgatatgccatttaggatagagtttttttctgatgaaattgattct
ataagaatatttgataaagacacacaaaaaactattgcaacgactgaagaaattattatt
aatccggcgagagaaattttaattcttgataaatacaaaaaaaacattattgataattta
aaaaaagattttgacaagacaaaagaagctaacaagagctcatactcacttatgaatgag
aagtttaaagaatattttgagatgcttaaggaagatagttttgataagaacagatctcta
ctattaagatatatccctgataaattcaagtgcggcatctttgattattttgatgaaaat
acttatatttatttagatgagagtaaaagacttgaagaagagtatgataagtacataaat
tttcactctcaagagatggagtccttatataagaacggcgagatattactaaaagagttt
aacgccatcatgtcatatggtgacgttcttaataggattaaaaagaataatttagtttta
ctgtcaaatattttattaaatacaaaagattttaatccaaaagctatttacaatttacat
ttaaattctgtaacaaaatacaattctaaatatgaagcacttcttgatgatttaagacac
tataagcttagaggctataagatacttttatctataaaagatattgaaagatacgataga
atttattctctattaaaagataatgacatagcttttatacaagaggatgaagtagatgac
aagattttatcaaatcagctattattaagaaatgattcatctactagaggttttgtattt
agtgaaaataaatttatagttttatctgaaaatgatatttatggctctcaaaaagaaaaa
cttagaaagaaaaaatcttcaaagaagcttgatatttcagatatatctgaaggaacatat
atagttcatgaagaccatggtgtaggtatatataagggcatagttaagctagaagtgctt
ggcgtaaaaaaagacttcttatatatacagtataagggcgaggacaaactttatgtacca
atcgctcagatggataggatacagaagttttctgataaagatagcaaagacgttaagata
aataaattatctacaaatgactggatcaagcaaaaatcaaaatcaaagaaggctattgaa
aagatggctgaagatttagttgaactatatgcaataagaaaagaaaaagaaggatatgcc
ttttcaaaagatactgcttggcaaagagactttgaagagtctttcccatatgaagagacg
aagggacagctcgaagcaattatcgatataaaaagagatatggagtcaaataagcccatg
gataggcttttatgcggggacgttggttttggcaaaactgaagtagcccttagagcagcg
ttcaaagccatcatggatggtaagcaagttgcattcttatgtccaacaactatactttgt
cagcagcattatgagacaattattgagagatttaataaatatccaatccgttcagctatg
atgtctcgctttagaacaagtaaagagcaaaagcaaacagccgaagagcttaaaactcat
agcatagacatagtcgttggaacacatagattattatcagatgatgttagatttaaagat
ttaggcttattaatcatagacgaagaacaaagatttggtgttagagataaagaaaaaatt
aaaaaactcaaggaaaatgttgatgttttatcactttcagccacaccaatacctagaacc
atgcacatggctttgtcaggcataagaagtatgtctgttatagaggaagcgcctcaagat
agatatccaatacaaacttatgttttggagtataataagagtctagttagagacgcgata
cttaaagagatggatagagacggtcaagtgttttttgtctttaataatgtcgagaacatt
gataaaatgtataatgaattacaaaatttagttcctgaagcaaggattgccatcggtcac
ggacaaatgactgagtcaaaacttgaaaaagttatgatggattttatgtatcataaatat
gacgttttgctatcgacaaccataatcgagacaggacttgacataccaaacgcaaataca
attatcgtttataactcagaaaatatgggtctaagccagctttatcaattaagaggaaga
gtaggcagaatgaatagaattgcttatggctatttcacttataaagaaaataaagttctt
actgaaacacaagaagagagactaaaggcgataaaagagtttactgagcttggcagtgga
tataaaattgctatgcgtgatttgcaaattagaggcgcaggtaatttattaggaacgtct
caacacggccacatcgctgcgatcggttatgatttatatattaaatatttaaatcttgct
ataaagaagcttagaggatatgaagttaaagaagatattgatacaagagttgacattacc
gttgatgcttatataccagatgattttgcccctgacgaatacattaagatggatctatat
aaaaagatagctgcagttgaaaacgaagagatgaagagcgagcttatagatgaaatcgtt
gacagatttgccgatatacctaaatcaatagttaatctaatcgatataagcgagattaga
tccatggcaaaagaattttcaataacatcaattaatgaggtaggtggcgattttaggata
gaatttttaaatgataaggttatcaatcctcaatggatagctgatatatataagaaatat
aagaacagactttatataaacaagagatatatgaatgttataagaatatctatagagggt
gaaaacaagataaaactcataaaagatatattaattttatttaaaatgagtaaatag
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