Peptostreptococcaceae bacterium oral taxon 929: C3V37_07675
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Entry
C3V37_07675 CDS
T05383
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pbq
Peptostreptococcaceae bacterium oral taxon 929
Pathway
pbq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C3V37_07675 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbq03019
]
C3V37_07675 (rnr)
03016 Transfer RNA biogenesis [BR:
pbq03016
]
C3V37_07675 (rnr)
Enzymes [BR:
pbq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
C3V37_07675 (rnr)
Messenger RNA biogenesis [BR:
pbq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C3V37_07675 (rnr)
Transfer RNA biogenesis [BR:
pbq03016
]
Prokaryotic type
tRNA degradation factors
C3V37_07675 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
CSD
DUF3221
Motif
Other DBs
NCBI-ProteinID:
AVM67718
UniProt:
A0A2P1G5Z7
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All DBs
Position
1610360..1612462
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AA seq
700 aa
AA seq
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MKIRELVMNYFSREDYVPQSKKDLLRTFKITKKDKKIFEKLLKSLEKDKKIICSNNKYYT
YNSSRVITGKYEANKRGFGFVIGDEFDVFIRFENSMYAMDSDEVCAIITDKKPDGNFEGK
IIKILNRATKRVVGTYQDNDSFGFIRCDDVKIIYDVFINKSASKNAKNGDKVVAEIIKYP
DKNKNPEGRVVEIIGKEDDPGIDITSIIKSYDLREYFPNRVKDELEEINYEINSDEIARR
VDYRDLLTITIDGVDSKDLDDAISLVKNDDKYTLYVHIADVANYVKERTYLDKEAYLRGN
SYYLLDRVLPMLPKELSNGICSLNPNEDRLTLSVRIDFDKNGEVISHKISEAIINSDHRL
NYPQVSDFLEGKKKAEELGLEGLEETLKNMQELMNVLNEKRNKRGNIDFDIVETKVILDE
KGKVIDIKPEERRVANKIIEEFMIAANETVAKEYFMKDLPFVYRVHEKPKREKMFYLAEF
LKRFDLYINPDNVSPADIANVLNQLKGKKESALISNIVLRTMQKARYTYEELGHFGLASK
YYSHFTSPIRRYSDLIIHRIIKDFINGRLKESKIVYYEKNLDQMTKHISETELVQEKAER
DIVQMKCAEYMQDKIGNVYVGEISSLTSFGVYVMLENTIEGLCHFSNMDDDFYYFDETEY
KVIGKDSLNEYKIGMKVRVAVVDASKETRTIDFKILGVVE
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattagggaacttgtaatgaattattttagcagagaggactacgttccccaaagc
aagaaggatttattaagaacttttaagattacgaagaaagataaaaaaatatttgaaaaa
ttacttaaatcattagaaaaagataaaaaaattatttgcagcaacaataaatattacact
tacaatagttcccgtgttattacaggaaagtatgaggctaataagcgtggatttggtttt
gttattggcgatgaatttgatgtatttattagatttgaaaattcaatgtacgccatggac
tctgatgaggtatgcgcgataattacagataaaaagccagatggcaatttcgaaggcaag
atcattaagatacttaatagagcaactaagagagttgtcggcacttatcaagataatgat
agctttggttttattagatgtgacgatgtaaagataatttatgatgtctttatcaataaa
agtgcatcgaaaaacgccaagaatggcgataaagtagttgccgagattattaagtatcca
gacaaaaataaaaatccagaaggaagagtcgttgaaatcatcggcaaagaggatgatcca
ggcattgacataacttcgataattaagtcttatgaccttagagaatattttccaaataga
gtaaaagatgaattagaagaaataaattatgagataaattcagatgagatagctcgcaga
gtcgattacagagacttattaactattactatagacggcgttgactcaaaagatttagat
gatgccatcagcttagtgaaaaatgatgataaatatactttgtatgtgcatatcgctgac
gtagcaaactatgtcaaagagcgcacttacttagacaaggaagcttacttaagaggcaat
tcctactacttgcttgatagggtcttaccaatgcttccaaaagagctttcgaacgggatt
tgctcacttaatccaaatgaagatagattaactctttcagttagaatagactttgataaa
aacggtgaagtcattagccataagatttctgaagcaataattaattctgatcataggctt
aactacccacaagtatcagattttctagaaggcaagaagaaggctgaggagcttggactt
gaaggtttagaagagactcttaagaatatgcaagagctaatgaatgttcttaacgaaaaa
agaaataaaagaggcaacattgattttgatatagttgagacaaaagttattttagatgaa
aaaggcaaagttattgatataaaaccagaagaaagacgtgttgctaacaagattatcgaa
gagtttatgatagctgcgaatgaaactgtggctaaagaatattttatgaaagatttgcca
ttcgtatacagagtgcatgaaaagccaaagagagagaagatgttctacttagctgagttt
ttgaaacgcttcgatttatacattaatccagataatgttagtccagctgatatagcaaac
gtattaaatcagcttaagggaaaaaaagagtcggcacttatatcaaatatcgttctaaga
actatgcaaaaggcgagatacacctatgaagagcttggtcactttggtcttgcatcaaaa
tattactcgcattttacatcgcctatcagaagatactcagaccttattattcatagaatt
atcaaagattttatcaatggtagacttaaggaaagtaaaatagtttattacgagaaaaat
cttgatcaaatgacaaaacatatatctgagactgaattagttcaagaaaaggcagagcgc
gatatagttcaaatgaagtgcgctgagtacatgcaagataaaattggcaatgtctatgtt
ggagaaatatcttcactaacatcatttggcgtctatgtaatgcttgaaaacactatagaa
ggactttgtcacttttcaaatatggacgatgatttttattattttgatgaaacagaatac
aaagttatcggcaaggactctttaaatgaatacaagataggcatgaaagttagagtggca
gtcgttgacgcatcaaaagagacaagaactattgattttaaaattcttggagtggttgaa
tga
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