Pectobacterium brasiliense: B5S52_16640
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Entry
B5S52_16640 CDS
T06364
Name
(GenBank) RNA polymerase subunit sigma
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pbra
Pectobacterium brasiliense
Pathway
pbra02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pbra00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
B5S52_16640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pbra03021
]
B5S52_16640
Transcription machinery [BR:
pbra03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
B5S52_16640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_ECF
Sigma70_r4
HTH_7
HTH_23
HTH_24
HTH_11
HTH_28
TnsD
HTH_36
GerE
Motif
Other DBs
NCBI-ProteinID:
ARA78566
LinkDB
All DBs
Position
3730114..3730635
Genome browser
AA seq
173 aa
AA seq
DB search
MSDHATPSAKLTLESLYGSHHGWLKHWLTGKLQSSFDADDIAQDTFLRVMNGESLTAIRD
PKSFLCTVAKRVMVDLFRRNALEKAYLDRLAQLPEALAPSPEIQQQQLETLQQVDLMLDG
LKHKARQAFLLSQLDGMAYGEIATRLNVSVSSVKKYVAKATEHCLLFRLEHGL
NT seq
522 nt
NT seq
+upstream
nt +downstream
nt
atatctgaccacgccacgccctctgctaaactgacgctcgaatcgctctatggttcgcat
cacggctggctgaagcactggctaacgggcaagctccaatcctcttttgacgccgatgat
attgctcaggacaccttcctgcgcgtgatgaacggcgagtcgctgaccgcaatccgcgat
ccaaaatccttcctgtgtaccgtcgccaagcgcgtgatggtcgatctctttcgccgcaat
gcgctggagaaagcctatctggataggctggcgcagttgccagaggcgcttgcgccctca
ccggagatccagcaacagcagcttgagacgctccaacaggtggatctcatgctcgatggc
ctgaagcacaaagcacgacaggcgtttttactttcccagcttgatggcatggcctacggc
gagatcgccacacggctgaatgtctccgtcagctccgtcaaaaaatacgttgccaaagct
acggagcattgcctgctgttccgtctggagcacgggctgtga
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integrated database retrieval system
