Paraburkholderia bryophila: NDK50_08830
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Entry
NDK50_08830 CDS
T08797
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pbry
Paraburkholderia bryophila
Pathway
pbry03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pbry00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NDK50_08830 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbry03400
]
NDK50_08830 (ligD)
Enzymes [BR:
pbry01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NDK50_08830 (ligD)
DNA repair and recombination proteins [BR:
pbry03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NDK50_08830 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
HC2
Motif
Other DBs
NCBI-ProteinID:
WCM21536
LinkDB
All DBs
Position
1:1943295..1946552
Genome browser
AA seq
1085 aa
AA seq
DB search
MPDRLDLYTRKRRFDATPEPAGARVGRQKTARKSAPRAADPALSFVIQEHHARRLHYDFR
LELNGALLSWAVPKGPSLDPSVKRLAVHVEDHPVEYGSFEGTIPPGNYGAGTVIVWDRGT
WEPLGGTKDALRSYEAGKLKFRLDGDKLHGGWTLVRSHMRGSGDKEQWLLIKERDDAARE
QSEYDVLKARPGSVLGDGASSPGQGAKSASRSDAASKWAEKGRDLYDDPGKNPGNGSSKR
GAKSAAKSDTKSTAKSTAKSTAKSTAKSTAKSTAKSTAKSGSKSGSKSATKSGSKSGSKS
ATKSAASRPSARPAPDSRRNRPDIVATRTAQSLRELAQSPSIEGAVRARLPATLKPQLAT
LIDGAPQGDGWSYEIKFDGYRILTRIDSTARTGEVKIFTRAGNDWTAKFNQQVKAFERLG
VDSAWLDGEAVVLDEHGVPNFQALQNAFDANRPQDIVVYLFDLPFLNGYDLRDVPLEQRR
AILRALLEEADDTVLRFSNDFEFSADDLLKSACDMALEGIIGKRRDSGYLAGRSSSWIKL
KCRRRQEFVIGGYSEPAGSRAAFGALLLGVYDGNGQLRYAGRVGTGFDAALLRSVKKLLD
AHETQRMPFAAAPRERSRTPVHWVEPVLVAECNFAEWTGDGIVRQASFVSLRNDKPARQI
VKEAPSQGADVQEQTDTASEAAPKKRAATKTTAARTAATKTAARKTAATKTTATKAAATK
AAATKTTAAKTTAAETTAAKNATKEFASSKKPAAKSTSKSTAKSPTPVTAKKSATRRVTA
KSAKATAVPAEVAGVRVSHPDRVIDKSTGTRKLDLVRYYESVADWMLPHLKDRPVSLVRA
PEDIGGELFFQKHSQKLSIPNVEQHPGLDPGHPPLITVDTLEALIGAAQMGTVEFHTWNA
VVSNIEKPDRMVFDLDPDTSLDWQRMIEAAQLTRSLLDELGLASFCKTSGGKGLHVVVPL
AKQAGWDDVKGFSQAVAQHMAATLPTHFSAKMGARNRKGKIFVDYLRNNRGSSTVAAFSA
RVRPGLGVSVPLAWDEVDTTTAGDQWTIENLHERLADLKRDPWADYAKTRQRLTAAMKKR
LEGAR
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atgccagaccggctcgatctctacacccgcaagcgacgtttcgacgcaacgccggagcct
gcgggcgcgcgcgtcggccgccagaaaactgcgcggaaaagcgcgccgcgcgcggcggac
ccggcgctgtcgttcgtgatccaggagcatcacgcgcgacgcctgcactacgatttccgc
ctcgaactgaacggcgcgctgctgtcgtgggcggtgccgaaagggccgagtctcgatccg
tcggtgaagcggcttgcggtgcatgtcgaggatcaccctgtcgaatacggctcgttcgaa
gggacgattccgcctgggaattatggggcggggaccgtgatcgtttgggatcggggcacc
tgggaaccgctcggcggcacgaaggacgcgctgcgttcgtatgaggcgggcaagctcaag
ttcagactcgacggcgacaagctgcacggcggctggaccctggtgcgcagccatatgcgt
ggcagcggcgacaaggagcagtggctgctgatcaaggagcgcgacgacgcagcgcgcgag
caaagcgagtacgacgtgctgaaggcgcggccggggagtgtgctgggcgatggtgcttcg
tcgccggggcaaggagcgaagtcggcatctcgaagcgacgccgcgtcgaagtgggctgaa
aagggccgagacctctacgacgaccccggcaaaaaccccggcaatggttcgagcaagagg
ggcgcaaaaagcgctgcaaagagcgacacaaagagcaccgcaaagagcaccgcaaagagc
accgcaaagagcaccgcaaagagcaccgcaaagagcaccgcaaagagcaccgcaaaaagc
ggttcaaaaagcggttcaaaaagcgccacgaaaagcggctcgaaaagcggctcaaaaagc
gccacgaaaagcgccgccagccgtccctccgctcgccccgctccagacagccgccgcaac
cgccccgacatcgtcgccacgcgcaccgcgcagtcgctgcgcgagctcgcccagtctccg
tcgatcgaaggcgccgtcagagcccgcttgcccgcgaccctcaagccgcaactggccaca
ctcatcgacggtgcgccgcagggcgacggatggtcgtatgaaatcaagttcgacggttac
cgtattctgacccgcatcgattcgaccgccagaaccggcgaggtcaagatattcacccgc
gccggcaacgactggaccgcgaaattcaaccagcaggtcaaggcgttcgaacgactcggt
gtggacagcgcgtggctcgacggtgaagcggtggtgctcgacgaacacggcgtgccgaac
tttcaggcgctgcaaaacgccttcgacgcgaatcgcccgcaggacatcgtcgtctatctg
ttcgatctgccgttcctgaacggctatgacttgcgcgacgtgccgctcgaacagcgccgc
gccatcttgcgggcgctgcttgaggaagccgacgacaccgtgctgcgcttttcgaacgat
ttcgagttcagcgccgacgacctcctgaaaagcgcgtgcgacatggcgctcgaagggatc
atcggcaagcggcgcgacagcggctatctggcggggcgctcgtcgtcgtggatcaagctg
aagtgccggcggcgtcaggagttcgtgatcggtggctattcggagccggccggcagccgc
gcggcattcggcgcgctgctgctcggcgtctacgacggcaacggtcaactgcgctacgcg
ggacgcgtcggcaccggcttcgacgccgcgttgctgcgctcggtcaagaaactgctcgac
gctcacgagacgcaacgcatgccgtttgccgccgcaccgcgcgagcgcagccgcacgccg
gtgcactgggtcgagccggtgctcgtcgccgagtgtaacttcgctgaatggactggcgac
ggcattgtgcggcaggcgtcgttcgtgagtttgcgcaacgacaaaccggcgcgccagatc
gtcaaggaagcccccagtcaaggagccgacgtgcaagagcaaaccgataccgcgtccgag
gccgcgccgaagaagcgtgccgcgacgaaaacgacggcagctagaactgccgcgacgaag
accgctgcgaggaaaaccgctgcgacgaaaaccactgcgacgaaagccgctgcaacgaaa
gccgctgcaacgaagactactgcagcgaagaccactgcagcggagaccactgcagcgaaa
aacgcaacgaaggaattcgcatcgtcgaaaaagcctgccgcgaaatccacctcgaaatcc
accgccaaatcccccacgccagtcacggcaaaaaaaagcgcaaccaggcgcgtcaccgcc
aaatcggccaaagccaccgcagtccccgccgaagttgccggcgtgcgcgtatcgcacccc
gaccgcgtgatcgacaaaagcaccggcacgcgcaagctcgatctcgtgcgctactacgaa
tccgtcgccgactggatgctgccgcatctgaaggaccggcctgtctcgctggtgcgggcg
cccgaggacatcggcggcgagctgttttttcagaagcacagccagaaactgtcgatcccg
aacgtcgaacaacatcccggcctcgaccccggtcatccgccgctgattaccgtcgacacg
ctcgaggcgctgatcggcgcggcgcaaatgggcaccgtggaattccacacatggaatgcc
gtcgtgtcgaacatcgagaagcccgaccggatggtgttcgatctcgaccccgacacatcg
ctcgactggcaacgcatgatcgaggctgcgcagctgacccgttcgctgctcgacgaactc
ggcctcgcgtcgttctgcaagacgagcggcggcaaagggctgcacgtggtcgtgccgctc
gcgaagcaggcgggctgggacgacgtcaagggcttctcgcaggccgtcgcgcagcacatg
gcggccacgctgcccacgcatttcagcgcgaagatgggcgcgcggaatcgcaaggggaaa
atcttcgtcgactatctgcgtaacaaccgcggctcgagcaccgtggccgcgttctcggca
cgcgtccggcccggcctcggggtgtccgtgccgctggcgtgggacgaagtcgacacgacc
accgccggggatcaatggaccatcgagaacctgcacgagcgcctggcggacctcaagcgc
gatccgtgggccgactatgcaaaaacgcgtcagcgtctcaccgcggccatgaaaaaacgg
ctggaaggcgcgcgttag
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