Rubinisphaera brasiliensis: Plabr_0835
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Entry
Plabr_0835 CDS
T01431
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pbs
Rubinisphaera brasiliensis
Pathway
pbs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pbs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Plabr_0835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbs03400
]
Plabr_0835
Enzymes [BR:
pbs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Plabr_0835
DNA repair and recombination proteins [BR:
pbs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Plabr_0835
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ADY58458
UniProt:
F0SHM0
LinkDB
All DBs
Position
complement(983795..987139)
Genome browser
AA seq
1114 aa
AA seq
DB search
MDQAGEIAAHSQAVREIPDLVPLVDATPEMAEIVAALQRGESGTIDGAWGSARALAASVF
VPHCSGMLVVVAPRATDMDELIVDLTAFLGEEPAVFPAIHGVPADWNLADPQYGARLQLL
KRLHQAGDETLPERPAFPRCLVTSIEALLQPVPSHQQLREFTRTLKVGDELDLEEWSHWL
VERGFERTTAIELPGEFAIHGGILDLFPTDSLAPLRIELFGDEVESIRTFDVESQRKIDT
LKQVQLTLFPAQEAVFGDQKKRKDNKPHQFGQHFATYLPEDSWFVLSELQELLDEGKLYL
ERLDSREGLFHVQAAMEACTAFPSVSISAISGGSFEKTCDLRTESIERFSVGQADPLTEL
EQALGIEERGLICCLNEGERSRIAELIDEKHPELKAKATLTLGRCSKGFRLVRQRMLVVS
DHELYGRRDVRPNQKRKTIQSRAIESFLELSEGDLVVHVGHGIGIFRGMQLIRGEDRTEE
HLVLEFADNVRIFVPVSLIHLVQKYVGASKAFPRLSKIGSNSWGQKKKKVSQAVADMAAD
MIKLQATREAKKGIAYPGDSHWYEEFEQAFPYEETPDQATAIDSIREDMMRERPMDRLIC
GDVGYGKTEVAMRAAFRAIDSGKQAAVLVPTTVLAEQHYRSFCARMAEFPYNIEMLSRFR
SKKEQKAILEGLEAGTIDLVVGTHRIVSPDIKFKDLGLVIIDEEQRFGVKAKEMLKRLRL
EVDILTLSATPIPRTLHMSLLGIRDISNLQTPPRGRQAIETRICRWDPELIRHAIVRELN
RNGQVYFVHNRVYDIEELTEKLQQIVPEAKFGIVHGQMSESELEKQMVAFVRGKTDVLMA
TTIIESGLDIPNANTMFIHEADRYGLADMHQLRGRVGRFKHRAYCYLVVEEGKVLSTTST
RRLKAIEEYSELGAGFKIAMRDLEIRGAGNILGTEQSGHISLVGYELYCQLLENAVREQK
NEAPREHPHVNLDLPVTGFLPNDYIPPGRAKIELYRKLSAVGDLQQLADLTDELQDRFGT
PPVPVQKLLALKELQILARVLSISQIHLEGKFFVFTGKKPQWLRAYKELSPHDLRLVDKK
TIYVPVPGDLDPESDDYEQNTLQFIKSVLQDRKA
NT seq
3345 nt
NT seq
+upstream
nt +downstream
nt
atggaccaagcgggggagatagccgctcattcgcaagcggtacgtgaaattcccgacctg
gttccgttggtcgatgccacgccggagatggcggaaatcgtcgctgccctgcagcgaggc
gagagcggtacgattgacggtgcctggggatctgcgcgcgccttggcggccagcgttttt
gtgccacattgcagcggcatgctggtcgtggttgccccacgcgccaccgacatggacgag
ttgattgtcgacctgaccgcctttctgggcgaagaacctgctgtcttcccagccattcat
ggcgtgcccgccgattggaacctggccgacccacagtacggagcccgtttgcagctgctg
aaacggctgcatcaggcgggggacgaaacactcccggaacggcctgcatttcctcgctgt
ctggtgacctccatcgaagcgttgttgcagccggtcccgtcgcatcaacagttgcgcgag
ttcacccgcacgctgaaagtgggggacgaactggatctggaagagtggtcgcattggctg
gtggaacggggttttgagcgaacaaccgccatcgaactgccgggcgaatttgcgattcac
ggcggcattctggacctgtttcccaccgattctctcgctccgctgcgaattgagctgttt
ggcgatgaagtcgagtcgattcggacgttcgatgtcgagtcgcagcggaaaatcgacacg
ctcaaacaggtgcaactgacgctgtttcccgctcaggaagcggtctttggcgatcagaaa
aaacgaaaagacaacaagccgcatcagtttggtcagcatttcgcgacctacctgcccgag
gacagctggtttgtcctgtccgaactgcaggaactgctcgacgaaggcaagctgtatctg
gagcgtctcgattcgcgggaagggctgttccacgtgcaggcggcgatggaggcctgcacc
gcgtttccttcggtcagtatcagtgcaatttccggcggaagcttcgagaagacctgcgat
ttacgcaccgaatcgatcgaacgattctcagttggccaggccgatccgctgaccgaattg
gaacaggcgctcggcattgaagagcggggcctgatctgctgtttgaatgagggcgaacgg
tcgcgtattgccgagctgatcgacgaaaaacacccggaattgaaggcgaaagcaacgctc
acgctggggcgttgcagcaaagggtttcggctggttcgccagcgaatgctcgttgtcagc
gatcacgagctgtacggccggcgtgatgtgcgtccgaatcagaagcggaagaccatccag
agcagggccatcgagagctttctcgagctgtccgaaggggatctggtcgtgcatgtcggg
catggcatcggcattttccgcggcatgcagctgattcgcggcgaagaccggactgaagag
catctggtgctcgaatttgccgacaatgtccgcatttttgtgcccgtctcgctcattcac
ctggtgcagaagtacgttggggcgagcaaagcgttcccgcgactgtcgaaaatcggcagc
aattcgtgggggcagaagaagaaaaaggtctcacaggcggtcgccgacatggcggccgac
atgatcaagctgcaggccacccgggaagcgaagaaggggattgcctaccccggcgattcg
cactggtatgaagaattcgagcaggcgtttccttacgaagaaacgcccgaccaggcgacc
gcaatcgactcgatccgcgaagacatgatgcgggaacggccgatggatcggctgatttgc
ggagacgtgggctacggcaaaacagaagtggcgatgcgagccgcgtttcgcgcgattgat
tcaggaaaacaggctgcggtgctggtcccgaccaccgtgttggccgagcaacattatcgc
tcgttttgtgcccgcatggccgagtttccgtacaacatcgaaatgctgtcccggttccgc
agcaagaaagaacaaaaggcgattctggaagggctggaagcgggcacgattgatctggtc
gttggcacgcatcgcattgtttcgcccgacatcaaattcaaagacctgggcctggtcatc
atcgacgaagagcagcgtttcggcgtgaaagcgaaggaaatgctgaaacggctgcggctg
gaagtcgacatcctcacgctttcagccacgcccattccgcgaacgcttcacatgtctctg
ctggggattcgagatatctccaacctgcagacgcctccccggggacggcaagcgattgaa
acgcgtatctgccgctgggatccggagttaattcgacacgccatcgtgcgggaactgaac
cgtaacggccaggtgtacttcgtccacaaccgtgtttacgacattgaagagctgaccgaa
aaactgcagcagatcgttcccgaagcgaaattcggcatcgtgcacgggcaaatgtcggaa
agcgaactcgaaaagcagatggttgcctttgttcgcggaaaaactgatgtgttgatggcg
acaacgatcatcgaaagcggtctcgacattccgaacgcgaacacgatgttcattcacgaa
gcggaccggtacgggctggccgacatgcaccagcttcgcggccgggtcggacgttttaag
caccgggcatactgctatctggtggtggaggaaggcaaagtgctttcgaccacatccact
cggcgattgaaggccattgaagaatacagcgaattgggggctggcttcaaaattgcgatg
cgggacctcgaaatccgcggagcaggaaacattctggggaccgagcagagcgggcacatt
tctctggtgggctacgagctgtactgccagctgctcgaaaacgcggtgcgcgaacagaaa
aacgaggctccgcgggaacatccgcacgtgaacctcgatttgcccgtgacaggatttttg
cctaacgactatattccacccggtcgggccaaaatcgagctgtaccgtaaattgtccgct
gtgggcgatttgcagcagctggccgatttgaccgacgaattgcaggaccgtttcgggact
cctcccgtgcccgtccagaagttgttggcgctgaaagaattacaaatcctggcgcgtgtg
ctttcgatcagtcagattcatctcgaaggaaagttctttgtcttcactggcaaaaaacca
cagtggttgcgagcctataaagagttgtcccctcacgacttacgtctggtggacaagaag
acgatctacgttcccgtcccaggggacctcgatccggaatcggacgattacgaacaaaac
acgctgcagtttatcaaatccgtgttgcaggatcggaaagcgtag
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