Sedimentisphaera cyanobacteriorum L21-RPul-D3: L21SP3_01044
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Entry
L21SP3_01044 CDS
T04695
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pbu
Sedimentisphaera cyanobacteriorum L21-RPul-D3
Pathway
pbu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pbu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
L21SP3_01044 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbu03400
]
L21SP3_01044 (mfd)
Enzymes [BR:
pbu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
L21SP3_01044 (mfd)
DNA repair and recombination proteins [BR:
pbu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
L21SP3_01044 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AQQ09242
UniProt:
A0A1Q2HP57
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All DBs
Position
1338667..1341909
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AA seq
1080 aa
AA seq
DB search
MNSCEEKIIEALSSGTGRIVCTGSWGAYPSWLASRLSERLSRAILIVHPHIEDSDCAADE
IHSFSSRRPLYLPAWEGEQDLSDSVGETAAERLKAAAKIPELSGGDVMCASVQALSQPLP
DPEGLEKDALSIACGKSIEPELAASWLADQGYEPCEAVDAPGEFAKRGGILDIYPPAAGI
TDTQGHSEKTRPVRIEFFGDEVETIRYINLDNQTSEGEIQKAEIYSRIQPMPEGGLSVFD
LISEEAVIIFAEPAEAGEVLQAYLSRAEGSGKYFTFSEIYKAASRLRLIEVSRFGSAGGE
ENHIQLCAESIEKYKTEAGSALEKSQQALAKLCEKAESGEQVLLYCESAGQIKRTKQLIL
SQRNFVPENLQINIGYVREGFSSRQEGLIVIGHHEIFAREFVRRRAARIRSSAGVHSLSD
LTSGDFVVHITNGIAIYRGTKIIEQNDCPREHMILEFADDAKIFVPVENISLVHKYIGSG
GMKPSLSRLGGKRWFNQKKKAYDAVMDMASEMLELQAKRKEAGGFAFSQDCDWQREFEDA
FPYQETADQIKAIEQIKADMQTAKPMERLLCGDVGYGKTEIAMRGAFKAVLSGKQTALLA
PTTILTLQHANTFRNRFAGYPVRIEVLNRFVSPGRAKEIIAESRAGRIDILIGTHRLLSN
DIAFADLGLLIIDEEQRFGVEHKEKLKKLKVNVDILSLSATPIPRTLHMSLMGLRDISTL
STPPLDRRSVATSIHRYDSSLIKQIISRELAREGQVFFLHNIVKTIDKTANHLRELFPDS
NIAAAHGQMHKKKLEKAMLDFAMKKIDILVCSTIIESGIDIPNANTIVINNADRFGLAQL
HQLRGRVGRFKRKARAELLIPPDRPITPVAARRLKAIEEYSELGAGFKIALRDLEIRGAG
NILGAEQSGHIDTVGYELYCQMLKNAVKQLKGDHTLPKPETSLDLGFTAHIPKNYIPSDK
QRLGAYRKAAEAETLEDLKLLEKELKDLFGALPEQVVWLIDLAKIKLRASENLIERIRAE
GKDLVFSFSPQAEDSKAADIFSRTSRRVTAVDKKTVHVRLSKNHFEPPTVLSFLRKIFVC
NT seq
3243 nt
NT seq
+upstream
nt +downstream
nt
atgaattcctgcgaagagaaaatcattgaagccctcagctcaggcacgggacggattgta
tgtacgggcagctggggagcttatccgtcttggctggcctcaaggctttctgaaaggctc
agccgagcgattctgattgtgcacccgcacatagaggattcagactgcgctgccgatgag
atacattcattcagttcaaggcgtcctctgtatctgcctgcttgggaaggcgagcaggac
ttgagcgattcggtgggcgaaacagcagcggagcgtctaaaggcagctgcgaaaatccca
gagctttcaggaggcgatgttatgtgcgcttctgttcaggcattgtcccagccccttcca
gaccctgaagggcttgagaaagatgccctttcgattgcctgcgggaaatcaatagaacct
gaacttgccgcaagctggctcgcagaccaaggctatgagccctgcgaggcggtagatgca
ccgggcgaatttgccaaacgtggcggaatactcgatatctacccgcctgctgccggaatt
acagacactcaggggcactcagagaaaacaaggcctgtccggattgagtttttcggcgat
gaggtggaaacaatccgatacatcaatctggataaccaaacatccgagggtgagatccag
aaagcggaaatctattcacgcattcagcctatgcctgagggcgggctgagcgtgtttgac
cttatcagcgaggaggcggtgattatctttgcagaaccggccgaggcaggtgaggttctt
caggcatatttgagcagggcagaaggcagcggaaaatacttcaccttcagcgaaatctac
aaagctgcatcaaggctaaggctgattgaagtcagcaggttcggttcagcaggcggtgaa
gaaaaccacatccagctatgcgctgagagcatagaaaaatacaaaactgaggcaggttct
gcccttgagaagagccagcaggccctcgcaaagctctgcgaaaaggccgaaagcggcgag
caggttctgctttactgcgaatcagcgggtcaaatcaaacgaacaaagcagcttatctta
tctcagcgaaactttgtaccggagaatctgcaaataaatattggctatgttcgcgaggga
ttctccagcaggcaggaagggcttatcgtaataggccatcatgaaattttcgctcgcgaa
tttgttcgcagacgcgcagcgaggatccgcagttctgcgggcgtgcattcactctccgat
ctaacctcgggcgacttcgtagtgcatataacaaacggcatcgcaatctaccgcggcaca
aaaatcatcgagcagaatgactgtccaagggagcatatgattctcgaattcgctgatgat
gcaaagatattcgtgcctgtggaaaatatcagcctcgtacacaaatatatcggctctggc
ggtatgaagccttcgctgagcaggctcggaggcaaacgctggttcaaccagaagaagaag
gcctacgatgctgttatggatatggcctctgaaatgcttgagcttcaggcaaaacgcaaa
gaggccggcggatttgcattctcgcaagactgcgactggcaaagggagtttgaagatgca
ttcccctatcaggaaacggccgatcagatcaaagctatagagcagataaaggccgatatg
caaacagcaaagccgatggagaggctgctgtgcggggatgtaggctacggaaaaacagag
atcgctatgcgcggggcgtttaaggccgtgctttcaggcaagcaaactgccctgctcgcc
ccaaccaccatcttaactcttcagcatgcaaacactttccgaaacaggtttgccggatat
cctgttcgaatagaggtgctgaacaggtttgtatctcccggacgggcaaaagagatcatc
gctgaatccagagcaggcagaatagatatcctcatcggcactcacaggcttttatcgaat
gatatagcctttgccgatctcgggcttcttattatcgatgaggagcagaggttcggcgtt
gagcacaaggaaaagctcaagaagctgaaagtgaacgttgacatcctctcgctctcggca
acgcctatacctcgcactctgcatatgtctcttatggggctgcgggatatcagcacgctc
tcaacgcccccgctggacagaaggagcgtggcaacatcaatccaccgctacgacagctcc
ctcataaagcagattatatcaagggagcttgcaagggaggggcaggtattctttttgcat
aatatcgtgaaaacaatagacaaaacagcaaaccacctccgcgagctcttccccgattcg
aatatcgctgcagcgcacggacagatgcacaaaaagaaactcgaaaaggcaatgctcgat
tttgcaatgaagaaaatcgatatccttgtatgcagcaccataattgaatcaggcattgat
attccaaacgcaaatactattgtgataaacaatgcagaccgcttcggcctcgcccagctc
catcagctccgaggaagggtaggcaggttcaaacgaaaagcaagagcagagctgcttatc
ccgccggacagaccaatcacccccgttgctgcgagaaggcttaaggcgattgaggagtat
tctgagctcggggcgggttttaagattgcactgcgcgatctggagataagaggcgcggga
aatatcctcggtgcggagcagtccgggcatatcgacacagtaggctatgagctgtactgc
caaatgctcaagaatgcagtaaagcagctgaaaggcgaccataccctacccaaacccgaa
acttcgctcgaccttggattcaccgcacacatccccaaaaactacatcccttcagacaag
cagaggctcggggcataccgaaaggccgctgaagctgaaacgcttgaagacctcaaactt
ctcgaaaaggagctcaaagaccttttcggagctcttcctgagcaggttgtatggctgata
gacctagcgaaaataaagctcagggcttctgaaaacctgattgaaagaatcagggctgag
gggaaagaccttgtcttttcgttcagcccgcaggcagaggattccaaagcagccgacatc
ttcagcagaacctcacgcagggttacagcggttgacaagaaaactgtccacgtgcggctg
agcaaaaatcacttcgaaccgcccacagtgctctcatttctaagaaaaatcttcgtctgc
tga
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