Peribacillus butanolivorans: DTO10_01215
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Entry
DTO10_01215 CDS
T06699
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pbut
Peribacillus butanolivorans
Pathway
pbut03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pbut00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
DTO10_01215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbut03400
]
DTO10_01215
Enzymes [BR:
pbut01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DTO10_01215
DNA repair and recombination proteins [BR:
pbut03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
DTO10_01215
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AXN37146
UniProt:
A0A7U6H2W1
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All DBs
Position
265953..267833
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AA seq
626 aa
AA seq
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MSITYCGGTNKMKPMLPTYYPEAPKSTDWRYEVKYDGFRAILTIDAHTVKITSRNGKELS
SLFPEISTFINDLDLKSFLPLQLDGELVWLTNEAKADFFEVQWRGRLRKQSLISEKANFT
PCRFIVFDLLRINGNDLTTNSMSERRKMIKNLGEILELPMPPNPNDKALIQLIESYVDLD
KAINKVILLDGEGIVAKEIQSTWQEGKRSTSWIKVKNWRAVSCFITALNKENGYVSLAVY
KGNEITKIGSVKNGLSAHDKSILHELIKQNASEEDEQFFYIHPSICIEVQFLHVYEENEL
REPQFSQWLLQTSPNECTWEKFVISQFTFPDSIQISSRDKPLWIIDDKQVIKVEYLQYLR
EVSAFFLPFLKDKLLTTIRYPHGSMDNEKFFQKNKPDYAPASIKTFWDEGIEYMLCNDIE
TLLWFGNQLALEFHTPFQKAGKVKPDEIVLDLDPPSIEFFSLAIKAALEIKKVMDSLNIQ
AFVKTSGNKGLQIHIPLPEDIFSYQETRMFTDFLGHYLISSYPDDFTMERLKKNRQNRLY
LDFVQHSEGKTIIVPYSPRGNPFAGVATPLYWEEVGERLQLKDFTIETVPNRIKRLGCAF
KDYRHVNNGPTFLEVLSFLKQKKTNS
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgtcaatcacttattgcggaggtacaaataaaatgaaaccgatgctgccaacatattac
cccgaagccccgaaatccacggattggcgttatgaagtcaaatatgacggttttcgtgcc
attttaacaatagatgcccatacggtaaaaattacgagtcgaaacgggaaggaattatct
tctcttttcccagaaatcagtacatttattaatgacctagatcttaaaagttttctacca
ctgcagttagatggtgaattagtctggctcacaaatgaagcaaaagcagacttttttgag
gtacaatggcgtggccgcctacggaaacaatccctgatttctgaaaaagctaattttacc
ccatgccgttttatcgtgtttgacctgcttaggatcaacggaaatgaccttaccactaat
tcaatgtcagaacgaaggaaaatgattaaaaaccttggagaaatacttgaattgcctatg
cctcctaatccaaatgataaggctttaattcaactgattgagagttatgtcgatttagat
aaggcaataaataaagtcatcctcttagatggagaagggatagttgccaaggaaattcaa
agtacttggcaagaaggaaaacgttccacttcctggatcaaagtgaaaaattggagggct
gtttcctgcttcatcacagctttgaataaagaaaacggatatgtttccctcgcagtatat
aaagggaatgaaatcacgaaaattggtagtgttaaaaatgggcttagcgctcacgataaa
agtatcttacacgaactgataaaacaaaatgcttcagaagaagacgaacaattcttttat
atacatccgtccatttgtattgaagttcaatttttacatgtatacgaggaaaatgaatta
cgtgaacctcagttttcacaatggcttttacagacatcccccaatgaatgtacttgggaa
aaattcgtaatcagccaatttacatttccagattcaatacaaatatcttcccgggataaa
ccactttggataatcgatgacaaacaggtgataaaagttgaataccttcaatatttacga
gaggtttctgcatttttcttaccctttttaaaggataaactcctaacaacgattcgttat
ccccatggatctatggacaatgaaaaatttttccaaaaaaacaaaccagattatgcgcct
gcatctattaaaacgttctgggatgagggtattgagtatatgttgtgtaatgatattgaa
acattgctgtggtttggcaaccaacttgcactagagtttcatactccatttcagaaagcg
ggaaaagtaaaacctgatgaaatcgtcctggatttagatccaccctcgattgaatttttt
tctttagcaattaaagctgcacttgaaataaagaaggtaatggattctttaaatattcaa
gcatttgtaaaaacttccggaaacaaaggactgcaaattcatattccactaccggaagac
atcttttcctatcaagaaacacgtatgttcaccgattttctcggtcattacttaataagc
tcttacccagatgattttacaatggaacgattgaagaaaaatcgacaaaatcgactctac
cttgactttgtacagcatagtgaagggaaaaccattattgtcccttattccccacgcggt
aatccgtttgctggtgttgctacaccattatattgggaagaagtgggcgaaagacttcag
ctcaaagactttacgattgaaaccgtaccaaatagaattaaaagattggggtgtgccttt
aaggattacagacatgtcaataatggccctacttttcttgaggttttgtcctttctcaaa
caaaaaaagaccaactcatag
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