Pseudomonas bijieensis: GN234_08745
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Entry
GN234_08745 CDS
T07266
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pbz
Pseudomonas bijieensis
Pathway
pbz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pbz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GN234_08745 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbz03400
]
GN234_08745 (mfd)
Enzymes [BR:
pbz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GN234_08745 (mfd)
DNA repair and recombination proteins [BR:
pbz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GN234_08745 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
AroM
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QKS82023
UniProt:
A0A6N1CKK9
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All DBs
Position
2040356..2043805
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPLLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELSHGVLVVPITTALHRLAPT
QFLLGSSLVLDIGQKLDVEQMRTRLEATGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPENQRSIDKVQSIRLLPAKEFPLQKEAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFEETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPSRPLLPPAELFLPVEDCFARLKSWPRVVASQQDVETGVGRERFPAKALPDL
AIEAKATQPLAALAGFLDTFPGRVLFTAETAGRREVLLELLERLKLRPKTVDNWPDFVAG
KDRLAITIAPLDEGLVLDDPALALVAESPLFGQRVMQRRRREKRADAANDAVIKNLTELR
EGAPVVHIDHGVGRYLGLATLEIDNQAAEFLTLEYAEGAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYETFSAGFP
FEETVDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSTKEVNAAVADLAEGKIDIVIGTHKLLQDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
GIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEINLRVPALIPEDYLP
DVHARLILYKRIASASDEEGLKDLQVEMIDRFGLLPEPTKNLVRTTLLKLKAEQLGIKKV
DGGPNGGRIEFEAQTPVDPLVLIKLIQGQPKRYKFEGATMFKFMVPMERPEERFNTVEAL
FERLTPTTA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgttctgcgtcttccgcttctccctgccgcggcaggtaaacagcactggggcaac
ctgcccggtgccgccctgagcctggccatcgccgaggctgccagcgctgcaaagcgtttc
accctgctgctgaccgccgacagccaaagcgccgagcggctggaacaggagctgagtttc
ttcgctccggatttgccggtcttgcatttcccggactgggaaaccctgccctacgatctg
ttttcgccacaccaggacatcatttcccagcgaatcgccagcctttatcggctgccggag
ctcagtcatggcgttttggtagtgccgatcaccacggccctacatcgcctggcaccgacc
cagttcctgctcggtagcagcctggtgctggacatcggccagaagctcgatgtcgagcaa
atgcgcacccgcctcgaggccactggctatcgctgcgtcgacacggtgtacgagcacggc
gagttcgcggtacgcggcgccttgatcgatctgttcccgatgggcagcaagctgccttat
cgcatcgacctgttcgatgacgaaatcgagaccctgcgcaccttcgatccggaaaaccag
cgctccatcgacaaagtgcaatcgatccgcctgttgccggccaaggagttcccgctgcag
aaggaagccgtgacccgcttcaaggcacgctttcgcgagcgcttcgatgtggattttcgc
cgttgcccgattttccaggacctgagcagcgggattactcccgccggcatcgagtactac
ttgccactgtttttcgaagaaacctccaccctgttcgattacctgccccaggacacccag
gtgttctccctgccgggcatcgagcaagcagcggaaaacttctggaacgacgtgcgcaac
cgctacgaagagcgtcgcgtcgatccttcccggcctttattgccgccagccgagctgttc
ctgccggtggaggactgttttgcccgcctcaagagctggccgcgggtggtggcgagccag
caggacgtggagaccggtgtcggtcgtgaacgcttcccggccaaagcgttgccggacctg
gccatcgaagccaaggccacgcagccactggcagcgctggctggctttctcgacacattc
cccggtcgcgtattgttcaccgccgaaaccgcgggtcgtcgcgaagtgctgttggagctg
cttgaacgcctgaagctgcgaccgaagacggtggacaactggccggacttcgtcgccggc
aaggatcgcctggcgattaccatcgccccgctggacgaaggactggtactcgatgacccc
gccctcgcgctggtcgccgaaagcccgttgttcggccagcgcgtcatgcaacgtcgccgt
cgcgagaaacgcgccgacgccgccaacgacgccgtcatcaagaacctcacagaacttcgc
gaaggtgcgcccgtggtgcacatcgaccacggcgtgggccgctacctgggcctggcgacc
ctggagatcgacaatcaggccgctgaattcctcacactggaatacgccgagggcgccaag
ctctatgtgccggtggcgaacctgcacctgatcgcccgctacactggcagcgacgacgcc
ctggccccactgcatcgcctgggctcggaaacctggcagaaagccaaacgcaaggcggcc
gaacaggtgcgcgacgtggccgccgaactgctggacatctacgcccggcgcgcagctcgt
gagggctatgccttcgccgatccgaaagccgactacgaaaccttcagcgccggtttcccg
ttcgaagaaaccgtcgaccagcagaccaccatcgaagcggtgcgcgccgacatgctcgcg
cccaagcccatggaccggctggtgtgtggcgacgtcggcttcggcaagaccgaagtggcg
atgcgcgccgcgttcatcgccgtgcacggtggcaagcaggtggcgatcctggtgccgacc
accctgctcgcccagcagcactacaacagtttccgcgaccgcttcgccgactggccggtg
accgtggaagtcatgagccgtttcaaatccaccaaggaagtgaatgccgccgtggccgac
ctggccgaaggcaagatcgacatcgtcatcggcacgcacaagctgctgcaggacgacgtg
aagatcaaaaacctggggctggtgatcatcgacgaggagcaccgctttggtgtgcgccag
aaagagcagctcaaggccctgcgcagcgaagtcgacatcctgaccctgacggccacgccg
atcccacgcacattgaacatggccgtgtcgggcatgcgcgacctgtcgatcatcgccacg
ccgccggcccggcgcctgtcagtgcgcacgttcgtgatggagcagaacaaaagcacggtc
aaggaagccttgctgcgtgagctgctgcgtggcggccaggtctattacctgcacaacgac
gtgaagaccatcgagaaatgcgccgccgacctggccgaactggtgccggaagcccgtatc
ggcatcggccacgggcagatgcgcgaacgcgaactcgagcaggtgatgagcgacttctac
cacaagcgcttcaatgtgctgatcgcctcgaccatcatcgagaccggcatcgacgtgccg
agcgccaacaccatcatcatcgagcgcgccgacaaattcggcctggcccagttgcaccag
ctgcgcggccgggtcgggcgtagccaccaccaagcctatgcctacctgttgaccccgcca
cgccagcagatcaccccggatgcggaaaagcgcctggaagccatcgccaatacccaggac
ctcggcgccggtttcgtgctggccaccaacgacctggaaatccgtggcgccggcgaattg
ctcggcgacggccagagcggtcagatccaggccgtcggtttcaccctgtacatggaaatg
ctcgaacgagcggtcaagtcgatccgcaagggcgaacagccgaacctcgaccaacccctg
ggcggcgggccggaaatcaacctgcgggtgccggcactgatcccggaagactatctgccg
gatgtccacgcgcggctgattctctacaaacgcatcgcctcggccagcgacgaggaaggc
ctcaaggacctgcaagtggagatgatcgaccgcttcggcctgttgccggaaccgaccaag
aacctggtgcgcaccacgctgctcaagctcaaggccgaacagctgggcatcaagaaagtc
gatggcggccccaacggtggccggatcgagttcgaggcccagacgccggtcgacccactg
gtgctgatcaagctgatccagggccaacccaaacgctacaagttcgaaggcgccacgatg
ttcaagttcatggtgcccatggaacgcccggaagagcgtttcaataccgtagaagcgctg
ttcgagcgcctcactccgaccactgcttga
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