Syntrophotalea carbinolica: Pcar_0328
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Entry
Pcar_0328 CDS
T00285
Symbol
dbpA
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pca
Syntrophotalea carbinolica
Pathway
pca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pcar_0328 (dbpA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pca03019
]
Pcar_0328 (dbpA)
03009 Ribosome biogenesis [BR:
pca03009
]
Pcar_0328 (dbpA)
Enzymes [BR:
pca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Pcar_0328 (dbpA)
Messenger RNA biogenesis [BR:
pca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Pcar_0328 (dbpA)
Ribosome biogenesis [BR:
pca03009
]
Prokaryotic type
rRNA helicases
Pcar_0328 (dbpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
HEM4
UvrA_inter
VpsR
Motif
Other DBs
NCBI-ProteinID:
ABA87588
UniProt:
Q3A7Q6
LinkDB
All DBs
Position
410936..412687
Genome browser
AA seq
583 aa
AA seq
DB search
MTEEVLTTFAELSLCPEINRVIEEIGYETPSPIQARSIPPLLEGRDLLGQAQTGTGKTAA
FALPLLSRLDLSLRSPQVLVLTPTRELALQVAEAVQTYARHLQGFHVLPVYGGQNMGQQL
RQLQRGAHVVVGTPGRIQDHLRRGTLKLDRLSCVVVDEADEMLKMGFIDDVEQILEHAPE
QRQTALFSATMPNEVLKVARRHLREPVEVRIKAKTSTVETISQRFWQVRGVRKLDALTRI
LEAEDIDAMIVFVRTKIATVELAEKLEARGFSSAALNGDMTQALREKTVERLKSGSLDIV
VATDVAARGLDVQRISHVVNYDIPYDTESYVHRIGRTGRAGREGSAILFVAPRERRMLAA
IEQATRQKIAPMKLPSRQDITNRRVALFKEQILDAMQSQDLEFFEDLIDGIQQEFDTEPR
TVAAALTYLLQKDRPLLPDEEAFEEVLPASGGRFDGGGRSHADEGLQRYRIEVGRVHGVV
PGHIVGAIANEAKISSRDIGQIKIYHDFSLVDLPADLSPAVMRHLQKVWVCGQQLQLVPD
LGPGPRQERPPRRRSGGRSFDKRGGKPGRKKFSGGKRPPKKTR
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atgactgaagaagtgcttaccacctttgccgaattatctttgtgccccgaaatcaatcgc
gttattgaggaaatcgggtacgaaacaccgtctcccatccaggcgcgcagtatcccgccg
ttgctggaaggccgggatcttttgggtcaggcccagaccggtacggggaaaaccgcagcc
tttgccctgccgttactcagtcgtctcgatttgtcgctgcgaagcccgcaggtgctggtg
ttgaccccgacacgcgagctggccttgcaggttgccgaggcggtgcagacctatgcccgc
catctgcaggggtttcatgtgctgcccgtgtatggaggacagaatatgggacaacagttg
cgccagttgcagcgcggtgcccatgtcgtggtcggtactccggggcgcatccaggatcat
ctgcggcgcggcactctgaagctcgatcgcctgtcctgcgtggtggtcgacgaggccgat
gagatgcttaaaatggggtttatcgacgatgtcgagcagattcttgagcatgcgccggaa
cagcggcagacggctcttttctccgccaccatgcccaacgaggtgctcaaggtcgcgcgt
cgtcacctgcgggaacccgtcgaggtgcgcatcaaggccaaaacctccacggttgagacc
atttcccagcgcttttggcaggtcaggggggtgcgtaagctcgatgccctgacgaggatt
ctcgaggccgaagacatcgacgccatgatcgttttcgtgcggaccaagattgccactgtc
gagttggcggagaagctcgaggcgcgggggttttccagtgcggctttgaacggcgatatg
acccaggctctgcgggagaaaacggttgaacgcctcaaaagcgggagcctcgatatcgtt
gtcgccaccgatgtcgcggcccgtggtcttgatgttcagcgcatcagccatgtggtcaac
tatgatatcccttacgacacggaatcttacgtacatcgcatcggtcgtaccggccgggcg
gggcgcgaaggttcggctatcctgtttgtggctccccgcgagcgacgtatgctcgcagcg
atcgaacaggcgacgcggcagaagatcgcgcccatgaaactgccgagtcgccaggacatt
accaatcggcgggtcgctcttttcaaggagcagattctcgatgccatgcagtcgcaggat
cttgagtttttcgaagatttgatcgacggtattcagcaggaattcgataccgaaccccga
accgttgccgcggctttgacgtatcttctgcagaaggaccgccctctgcttcctgatgag
gaggctttcgaggaggttctgccggcttctggcggacggttcgatggtggcggccggagt
catgccgacgaggggctccagcgctaccgcatcgaggtcggtcgggttcatggcgtggta
cccgggcacattgtcggtgctatcgccaacgaggcgaaaatcagcagtcgcgatatcggt
cagataaagatctatcacgatttcagtttggttgacctgccagccgatctttcacctgcc
gttatgcgccatttgcaaaaggtctgggtttgcggtcagcagttgcagcttgtccccgac
ctcggccccggccctcgccaggaaaggcctcccaggcgtcgctccggcgggagatccttc
gacaagcgcggtggcaaacctggacggaagaaattttccggtgggaagcgcccgcccaaa
aagacgcgatag
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