Syntrophotalea carbinolica: Pcar_2678
Help
Entry
Pcar_2678 CDS
T00285
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma-70 factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pca
Syntrophotalea carbinolica
Pathway
pca02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pca00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Pcar_2678 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pca03021
]
Pcar_2678 (rpoD)
Transcription machinery [BR:
pca03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Pcar_2678 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Sigma70_ner
DUF2959
COG3_N
Laminin_I
DUF5344
RPW8
Motif
Other DBs
NCBI-ProteinID:
ABA89914
UniProt:
Q3A143
LinkDB
All DBs
Position
complement(3129423..3131189)
Genome browser
AA seq
588 aa
AA seq
DB search
MAKKHGMEEVQQLIDMGKEKGYLTYDEVNDYLPESVVSSDQLDDVMSLFGEMDIEVVDSE
QKVSVSKTQSDSDDSSSDSGEEEEETEYEAGTLGRTSDPVRMYLREMGQVSLLTREGEVE
IAKRIEEGEALVARVIMKTPIAFREVIRLGEKLAKEQIGVAEITKEYEEEEGADVEEVQR
TRILDLVEKIRQQNDELMVLCQELADCGDRQQRNSLRDQIAEKKASIGELMREIRLKDFQ
VDKIVDRLKDMAQQVKKGLSEVQACEEELKQPHKEIKRLLRRMRKSDEEAHRISQDLGVP
IDTLLSVEKRLKSAQRKFNRVEDESGFAPEELLGSLKEVMKGEWRAKAAKSELVEANLRL
VVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQ
ARTIRIPVHMIETINKLIRTSRQLVQEMGREPVPEEIAERMELPLEKVRRVLKIAKEPIS
LETPIGEEEDSSLGDFIEDKGVVSPLEAVIKGNLSDQTSRVLASLTPREEKVLRMRFGIG
EKSDHTLEEVGQDFAVTRERIRQIEAKALRKLRHPSRARRLKSFVETT
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atggccaagaaacacggcatggaagaagttcagcagcttatcgatatgggtaaggaaaaa
ggttaccttacctatgacgaagtgaacgattatcttccggaaagcgtggtctcttccgac
cagttggatgatgtcatgagtctgttcggcgaaatggatattgaagtcgtcgattcagag
cagaaggtgtctgtgtccaagacccagagcgatagtgacgacagcagctccgactccggc
gaagaagaggaagagacggaatacgaagccggaaccctgggacggacaagcgatcccgtg
cgcatgtatttgcgggaaatgggacaggtatcgctgctgactcgtgaaggggaggtggag
atcgccaagcgcatcgaagagggtgaggcgctggtggcccgggttatcatgaagaccccc
attgcttttcgcgaagtgattcgcctgggtgaaaagcttgccaaggaacagattggcgtg
gcggagatcaccaaggagtatgaagaagaagagggcgccgatgtcgaggaggttcagcgc
acgcgcatccttgatctggtggaaaaaatccggcagcagaatgacgagctgatggttctg
tgccaggagttggccgattgcggcgatcgtcagcagcgtaacagcctgcgcgaccagatc
gcggaaaagaaggcatccatcggcgagctgatgcgggaaatccgcctgaaggattttcaa
gtggacaagatcgtcgatcgcctcaaggatatggcgcagcaagtcaaaaagggcttgtcc
gaggtgcaggcctgcgaagaagagcttaagcagccgcacaaggaaatcaagcgcctgttg
cggcggatgcgtaaaagcgatgaagaagcgcatcgtatttcgcaggatctgggtgtgccc
atcgataccctgctgtccgttgaaaaacgtctgaagagcgcccagcgcaaattcaatcgc
gttgaggatgagtccgggttcgctccggaggaattgctcggctcgctgaaggaagtcatg
aagggcgagtggcgggccaaggcggccaagagtgaactggtcgaggccaacttgcggctg
gtggtgtccatcgccaaaaaatacaccaatcgcgggctgcagttcctggatcttatccag
gagggcaatatcggtctgatgaaggccgtcgacaagttcgaatatcagcgcggttacaaa
ttctcgacctatgccacctggtggattcggcaggccattacccgtgccattgccgatcag
gcgcgcaccatacgtattccggtgcatatgatcgaaaccatcaacaagctgatccgtacc
agccgccagctggtgcaggagatgggtcgggagccggtgcccgaagaaatcgccgagcgt
atggaactgccgctggaaaaagtacggcgggtactcaagattgccaaggagccgatcagc
cttgaaaccccgatcggcgaagaagaggactcctccttgggggatttcatcgaggacaaa
ggcgtggtttcgcccctcgaggcggttatcaagggcaatctttccgatcagacgtcgcgg
gtgcttgcgtcattgactccccgtgaggagaaggtgctgcgcatgcgattcggtatcggc
gaaaaatccgatcatacccttgaggaagtcgggcaggattttgcggtcacgcgggaacgt
attcgtcagatcgaggccaaggcgctgcgcaaactgcggcatcccagtcgcgccagacgt
ttgaaaagctttgttgaaaccacttga
DBGET
integrated database retrieval system
