Pseudomonas cannabina pv. alisalensis: JGS08_04025
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Entry
JGS08_04025 CDS
T07379
Name
(GenBank) autotransporter domain-containing protein
Organism
pcab
Pseudomonas cannabina pv. alisalensis
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Autotransporter
SUFBD
Trypan_PARP
Motif
Other DBs
NCBI-ProteinID:
QQN24589
LinkDB
All DBs
Position
complement(893248..896229)
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AA seq
993 aa
AA seq
DB search
MLTNGQDTFNSDRVIDGAIDVNSTDGNTSTLTINSGATVTSEGGRIVGQASRTGVNMAQA
NVVVEGAGSRWVVPRTSFVLGNTIVVGGVGQGDLTVRNGGQVSVRDLDLGDVSGARSNAF
SNATLSVSGQNSLVDAVNIEAGGVFVYRSSITANEGARINSQQVDIDSVVRLSGTGTRWD
NSGSFLNRNDLTLENGAVLTSNSLRLGSAVINRSNQVNITGQGTRLAVQSMTLGTNETRI
YLTLADGAELSATNGILISTVNDINNATRGTLIVGGPLVVDPNRTDIDFVSAGTPQAAGR
LDPQTAITFGTGNGQLAFNHTDTDLQFANTLNGTGRVYAFNGNTTLSGDTSGLAGGVVVR
GGRLVLSGNVDQVNQRGNTATTQSVSQFNVGNGTLVVNGIAGRTEFGTYTNSAQVLDGGI
LAGVGQVGSTQVASGGTLSPGESAIGALAIQGDLDMAAGSRYAADIAGDGRADKINVSGT
ATLRGTQVNVTALDPAQSYQSGRTYTLLSAQGGLVDGAAAGTAYAQALTNSAFLNVGLQR
TANDLNLTIEQKSVEPTPTPTPTPTPTPTPTPTPEPTPTPEPTPTPTPTPEPTPTPTPEP
TPTPTPTPTPTPVPAPAPGIFQSVMLTQNQFNTAGALSVLQQSGEPLRLYNNLLILDAAS
ARNAADQLSGDYHSSTSTALIANSQVVSGVLGTRVRNLLDSGTLRMPAMALNLMPSTPAA
ENGAWVQPFGNWTKVDGNNGAGGLSQSTGGLLFGADGSFTPDWRGGVYAGYSRSKFDADD
RDAEGHSDNYHLGLYTGGQIDALRLSADVGYTWHRLESERNVAFAGFSDHLTGKRNAQSL
QASGEAAYQIPLGSVALEPFAGLSYVRYDAKDLHEKGGPAALDVSSDKQDTVFSTLGLRA
STNTRIANLDTQVYGSLGWRRAFGDLDPRNDQSFAGGPNFEVQGVAQTRNTALTEVGAKL
RLNRQTDLGLSYQGQFGTDTRFHSVNAGVTVRF
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
gtgctcactaatggtcaggacacctttaacagcgaccgcgtcatcgatggcgcgattgac
gtcaattcaactgacggcaacacctccaccctgacgatcaacagcggtgcaacggtgacc
agcgaaggcggccgtatcgtgggtcaagccagccgtaccggcgtcaacatggctcaggcc
aacgttgtggttgaaggggccggttcgcgctgggtagtgcctcgtacctcattcgtcctc
ggtaacaccatcgttgtcggtggtgtcggccagggcgacctgacggttcgcaacgggggc
caggtgtcggtgcgggatctggatctgggtgacgtcagtggtgcccgttccaatgcattt
tcgaacgcgacgctgtcggtgagcggccagaactccctggtcgacgcagtcaacatcgag
gccggtggagtgtttgtctatcgctcgagcatcacggccaacgagggtgccagaatcaac
agccagcaggtcgacatcgactcggtcgtcaggctttccggcacaggaacacgctgggac
aacagtggctccttcttgaacagaaacgacctgaccctcgaaaacggcgcagtacttaca
agtaactctctacgactgggttcggccgtcatcaaccgcagcaatcaagtgaatattacc
gggcaaggcacacgcctcgccgtgcaaagcatgacgctgggcaccaacgaaacccgcatc
tacctgacactggccgacggtgccgaactgagcgctaccaacggtatccttatcagcact
gtgaacgacatcaacaatgcgacaaggggaacgctcattgtgggcggtccgctcgtggtc
gaccctaaccgtactgatatcgatttcgtgagtgccggaacacctcaggcggccggccga
ctggacccgcaaaccgctattaccttcggcaccggcaacggacagctggcattcaaccac
accgacaccgatctgcagttcgccaacacgctgaacggaacgggtcgagtgtatgcgttc
aacggcaataccacgctgagcggcgacacctcggggttggccggtggcgtcgtggtgcgc
ggtggtcgactggtgttgtcgggaaacgtcgaccaggtcaatcagcgcggcaacacggcc
accacccaaagcgtttcgcagtttaacgtaggcaacggcaccctggtggtcaacggcatt
gcgggccgcactgagttcgggacctacaccaacagcgcccaggtactggacggaggtatt
ctggctggcgtcggtcaggtgggcagcacccaggtcgcctccggcggtacgctatcgcca
ggagaaagcgccataggtgcgctagcgatacaaggtgatctggacatggccgccggttcg
cgttacgccgcggacatcgcgggcgacggcagggccgataagatcaacgtgagcggcacc
gccaccctgcgcggtacgcaggtcaacgtgaccgcgctggatcccgcgcagagctatcag
agcggcaggacctacacgctgctctccgctcagggcggtctggtcgacggcgccgccgca
ggcactgcctatgcccaggcactgaccaactcggcgttcctgaatgtcgggctgcaacgc
actgccaatgacctgaacctcaccatcgagcaaaaaagcgtagagcctacgcctacccca
actccaactccaactccaactccaactccaaccccaactccagaaccgaccccgaccccg
gagcctacacctacacctacacctacaccggaaccgactccgactccgactccggaaccg
acaccaacaccaacaccgacgccaacgccgacacctgtgccagctccagctccaggcatt
ttccagtccgtcatgctgacccaaaaccagttcaataccgctggcgcgctgagcgtactg
caacaaagcggcgaacccctgcgcctctacaacaacctgctgattctggatgccgcaagc
gcgcgtaacgctgccgatcaactgtccggcgattaccacagcagcacgtcgaccgcactg
atcgccaacagccaggtggtgtccggcgtactgggaacccgtgtgcgtaatctgctcgac
agcggaacactgcgcatgccggccatggcactcaacctgatgccaagcacgcccgccgcc
gaaaacggtgcctgggtgcagccattcggcaactggaccaaggtcgacggcaacaacggt
gccggcggtctgagccagagcaccggcggcctgctgttcggtgccgacggcagcttcact
cccgattggcgtggcggcgtctacgccggatacagccgttcgaagttcgacgccgatgac
cgagatgccgaaggccacagcgataactaccacttgggtctctacaccggtggccagatc
gacgccctgcgcctcagcgccgacgttggttacacctggcaccgtctggaaagcgagcgc
aacgtggcgtttgccgggttcagtgatcacctgaccggcaaacgcaacgctcaatcgctg
caggccagtggtgaagcggcctaccagatcccgttaggcagcgtggctctggagcctttc
gccggtctttcctacgtgcgttacgatgccaaggatcttcacgaaaaaggcggaccagcc
gctctggacgtgtccagcgacaagcaagataccgtcttctcgacgctcggcctgcgcgca
tcgaccaacacccgtatcgcgaacctcgatactcaggtctacggctcgctgggatggaga
cgtgccttcggtgatctggatccgcgcaacgatcagagctttgccggcggtccaaacttc
gaagtgcaaggcgtagctcaaacccgcaacacagcgttgactgaagtaggcgcgaaactg
cgcttgaatcgtcagaccgacctgggcctgtcctatcaagggcagttcggtaccgacact
cgcttccattcggtaaacgcaggagtaacggtccgcttctga
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