Pseudomonas cannabina pv. alisalensis: JGS08_17400
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Entry
JGS08_17400 CDS
T07379
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pcab
Pseudomonas cannabina pv. alisalensis
Pathway
pcab03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pcab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JGS08_17400 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcab03400
]
JGS08_17400 (mfd)
Enzymes [BR:
pcab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JGS08_17400 (mfd)
DNA repair and recombination proteins [BR:
pcab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JGS08_17400 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
AroM
AAA_22
DUF6732
Motif
Other DBs
NCBI-ProteinID:
QQN20395
LinkDB
All DBs
Position
3916134..3919586
Genome browser
AA seq
1150 aa
AA seq
DB search
MPVLRLPHLSAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELKF
FAPTLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELVHGVLVVPITTALHRLAPT
KFLLGSSLVLDVGQKLDVEAMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPMGSKLPF
RIDLFDDEIETLRTFDPDTQRSIDKVESVRLLPAREFPLQKEEVTRFKARFRERFDVDFR
RSPIFQDLSSGITPAGIEYYIPLFFEETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPARPLLPPAELFLPVEDCFARLKNWPRVVASQQEVDTGAGRERFPAQILPDL
SIEAKASQPLAALAKFLDEFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWLDFVDG
KDRLAITIAPLDDGLLLEQPALALVAESPLFGQRVMQRRRREKRTDGGNNDAVIKNLTEL
REGAPVVHIDHGVGRYLGLATLEVENQVAEFLMLAYAEDAKLYVPVANLHLIARYTGSDD
EMAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGF
PFEETPDQQTTIEAVRADMLAPRPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVP
TTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVSAAVADLAEGKIDIVIGTHKLLQDD
VKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIA
TPPARRLSVRTFVMEQNKPTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEAR
IGIGHGQMRERDLEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLH
QLRGRVGRSHHQAYAYLLTPPRKQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGE
LLGDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLDQPLGGGPEINLRVPALIPEAYL
PDVHTRLILYKRIANAADEDALKDLQVEMIDRFGLLPEPTKHLVRITLLKLQAEQLGIKK
VDAGPQGGRIEFAADTPVDPLTLIKLIQSQPNRYKFEGATLFKFMVPMERPEERFNTIEA
LFERLTPKTA
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
gtgccagttctgcgtctaccgcacctttctgccgctgcaggcaaacaacactggggcaat
ctgcccggtgccgcactcagcctggccattgccgaggccgccagcgcagccaaacgcttc
accctgcttctgaccgccgacagccaaagcgccgagcggctcgagcaagagctgaagttt
tttgcgcccacgctgccggttctgcacttcccggactgggaaaccctgccctacgatctg
ttctcgccgcatcaggacatcatttcccagcgcatcgccagcctttatcgcctgccggag
ctggtgcatggcgttttggtagtaccgatcaccactgccctacacagactcgcgccgacc
aaatttctgctcggcagcagcctagtgctggatgtcggtcagaagctcgacgtggaggcc
atgcgcacgcgtctggaagccagcggctatcgctatgtggacacggtttacgagcacggc
gagttcacggtgcgcggtgcgctgatcgatctgttcccgatgggcagcaagctgccgttc
cgcatcgacctgttcgatgacgagatcgaaaccctgcgcaccttcgacccggacacccag
cgctccatcgacaaggttgaatcggtacgcctgttgccggcccgcgagttcccgctacaa
aaagaagaagtcacgcgtttcaaggcgcgtttccgcgagcgctttgacgtggacttccgc
cgcagcccgattttccaggacttgagcagcggcatcacgcccgccggtatcgagtactac
atcccgctgttcttcgaagaaacctcgacgctgttcgactacctgccgcaggacacccaa
gtgttctcgctgcccggtatcgagcaagccgccgagaacttctggaacgacgtgcgcaat
cgttacgaagagcgtcgtgtcgatccggctcggccactattgccgcccgccgagttgttc
ctgccggtggaagactgtttcgcgcgcctgaaaaactggccgcgtgtggttgccagccag
caggaagtcgacaccggggccggacgcgagcgctttccggcgcagattctgccggacctg
tccatcgaggccaaggccagccagccattggcggccctggcgaagtttctcgatgaattc
cccggccgcgtgctgttcaccgccgagtccgccggacgccgggaagtgctgctggagctg
cttgagcgcctgaagctgcggccgaaaaccgtcgacagctggctggatttcgtcgacggc
aaggatcgtctggcaatcaccatcgcaccgctggacgacggcctgctgctggaacaaccg
gccttggcgctggttgcggaaagcccgctgttcggccagcgcgtcatgcagcgccgtcgc
cgcgaaaaacgcaccgacggtggcaacaacgacgcggtgatcaagaacctgaccgagctg
cgtgaaggcgcgccggtggtgcatatcgaccatggtgtcggccgttatctggggctggcg
acgctggaagtcgaaaatcaggtcgcggaattcctgatgctggcctacgccgaagacgcc
aagctgtacgtcccggtcgccaacctgcacctgatcgcccgctacaccggcagcgacgac
gaaatggcgccgctgcatcgcctgggctcggaaacctggcagaaggccaagcgcaaggcg
gccgaacaggtccgcgacgtggcggccgaattgctcgacatctatgcgcgccgggccgct
cgcgaaggctatgcgtttgccgacccgaaagccgattacgccaccttcagcgctggcttc
ccgttcgaagaaacccccgatcagcagaccaccatcgaagccgtgcgcgccgacatgctg
gcgcccaggccgatggaccgcctggtctgcggcgacgtgggtttcggcaagactgaagtg
gccatgcgcgcagcgttcatcgccgtgcacggcgggcgtcaggttgcgattctggtgccg
accaccctgctcgcccagcagcactacaacagcttccgcgaccgctttgccgactggccg
gtgaccgtggaagtgatgagccgtttcaagtcagccaaagaagtcagcgccgccgtcgcc
gatctggccgaaggcaagatcgacatcgtcatcggcacgcacaagctgttgcaggatgac
gtgaaaatcaaaaatctcggcctggtgatcatcgacgaagaacaccgcttcggcgtgcgc
cagaaagaacagctcaaggcgctgcgcagcgaggtcgacattctgaccctgaccgccacg
ccgattccacgcaccctgaacatggccgtatcgggcatgcgcgacctgtcgatcatcgcc
acgccaccggcgcgcaggctgtcggtgcgcaccttcgtcatggagcagaacaagccgacg
atcaaggaagcgctgctgcgcgagttgctgcgcggcgggcaggtttattacctgcacaac
gacgtcaagaccatcgagaaatgcgcagcggacctggccgaactggtgccggaagcgcgt
atcggcattggccacggccagatgcgcgagcgtgacctcgaacaggtgatgagcgacttc
taccacaagcgcttcaacgtgctgatcgcctcgaccatcatcgagaccggcatcgacgtg
ccaagcgccaacaccatcattatcgaacgcgccgacaagttcggtctggcgcaactgcac
cagttgcgcggccgtgtcgggcgcagtcaccaccaggcctacgcctacctgctgacaccg
ccgcgcaagcagatcacccccgacgcggaaaagcgtctggaagcgattgccaacacccag
gacctcggcgcgggcttcgtgcttgccaccaatgacctggaaatccgtggcgcgggcgaa
ctgcttggcgatggccagagcggccagattcaggccgtcggtttcacgctgtacatggaa
atgctcgaacgtgccgtcaaggcgatccgcaagggtgaacagccgaacctcgatcagcca
ctgggcggcgggccggaaatcaacctgcgcgtaccggcactgatcccggaagcctatctg
ccggacgtgcacacacgcctgattctctacaaacgtatcgccaacgcggcagatgaagat
gcgctgaaggacctgcaagtcgaaatgatcgaccgcttcggtttgctgcccgagccgacc
aagcatctggtgcgcatcacgctgctgaagttgcaggccgaacagctgggcatcaaaaaa
gtcgacgctgggccgcagggtggacgcatcgaattcgcggccgataccccggttgatccg
ctgaccctgatcaagctgatccagagccagcccaaccgctacaaattcgaaggtgccacg
ctgttcaagttcatggtgcccatggaacgcccggaagagcgtttcaacaccattgaagcg
ctgttcgagcgcctgaccccgaaaactgcctga
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