Pseudomonas cannabina pv. alisalensis: JGS08_19475
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Entry
JGS08_19475 CDS
T07379
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
pcab
Pseudomonas cannabina pv. alisalensis
Pathway
pcab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JGS08_19475 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcab03019
]
JGS08_19475 (rhlB)
Enzymes [BR:
pcab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JGS08_19475 (rhlB)
Messenger RNA biogenesis [BR:
pcab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JGS08_19475 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
Motif
Other DBs
NCBI-ProteinID:
QQN20773
LinkDB
All DBs
Position
4356224..4357684
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AA seq
486 aa
AA seq
DB search
MTVLKALKKMFGKSEAEQRAPIPTAPLSASPAPVQGDSQDHAVQAQALDTVNEPAKTRTP
RADKPRAERPRRERVAKPPAPEWKLEDFVVEPQEGKTRFHDFNLAPELMHAIQDLGFPYC
TPIQAGVLGFTLKGKDAIGRAQTGTGKTAAFLISIIEQLTQTPPPAERYMGEPRALIIAP
TRELVVQIAKDAADLTKYTDLNVMTFVGGMDFDKQLKQLEARHCDILVATPGRLLDFNQR
GEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGERQTLLFSATFTEDVMNLAKQ
WTTDPSIVEIESLNVASDNVEQHIYAVAGADKYKLLYNLVTDNGWERVMVFANRKDEVRR
IEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINF
TLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSYQLPAIEEKLGRKISCETPPTHLLRP
VVRQTS
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtgctcaaagcactaaaaaagatgttcggtaagagcgaggctgagcaacgcgcg
cctataccgacagcccccctctctgcctcccccgcgcctgtccaaggcgactcacaggat
catgctgtccaggctcaggctctggacaccgtcaacgagcccgccaagacacgcacgccg
cgtgccgacaagccaagggccgaacgcccgcgccgggaacgtgtggccaagccgcctgcg
ccggaatggaaactcgaagatttcgtcgtcgagccgcaggaaggcaagacccgctttcac
gatttcaacctggcgcccgaactgatgcatgccattcaggacctgggtttcccgtattgc
acgcccattcaggcgggtgtgctgggtttcaccctcaagggcaaggacgcaatcggccgc
gcccagaccggcaccggcaagacagcggcgttcctgatctcgatcatcgagcagttgacc
cagacaccgccaccggccgagcgctacatgggtgaaccgcgcgccttgatcatcgcgccc
acccgtgagctggtggtgcagatcgccaaggacgccgccgacctgaccaagtacaccgac
ctgaacgtcatgacgttcgtcggcggcatggacttcgacaagcagctcaagcagcttgaa
gcgcgtcactgcgacattctggtcgccacgccaggccgcctgctggacttcaatcagcgc
ggcgaagtgcatctggacatggtcgaagtcatggtgctcgacgaagccgaccgcatgctc
gacatgggctttatcccacaagtgcgtcagatcattcgccagaccccgcacaagggcgaa
cgccagaccctgctgttctccgcgaccttcaccgaagacgtgatgaacctcgccaaacag
tggaccaccgacccttccatcgtcgaaatcgagtcactgaacgtggccagcgacaacgtc
gaacagcatatctatgccgtggccggtgcggacaagtacaagttgctctacaacctggtc
accgacaacggctgggaacgggtcatggtcttcgccaaccgcaaagacgaagtccgccgt
atcgaagagcgtctggtgcgcgacggcgtcaatgcggcgcagttgtcaggcgatgtgcct
cagcataagcgcatcaagacgctggaaggctttcgcgaaggcaagattcgcgtgctggtc
gccaccgacgtggccggtcgcgggattcacatcgacggcatcagccacgtgatcaacttt
accctgccggaagtgccggacgattacgtgcaccgcatcgggcgtaccggccgtgccggg
gctgacggcgtctcgatcagctttgccggtgaagacgactcgtaccagttgcctgccatc
gaagagaagctgggccgcaagatcagttgcgagacaccaccgactcatttgctgaggccc
gtggtgcggcaaaccagctga
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