Pectobacterium cacticida: OI450_07125
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Entry
OI450_07125 CDS
T08693
Name
(GenBank) DEAD/DEAH box helicase
KO
K19789
DNA repair protein RadD
Organism
pcac
Pectobacterium cacticida
Brite
KEGG Orthology (KO) [BR:
pcac00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcac03400
]
OI450_07125
DNA repair and recombination proteins [BR:
pcac03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factor
OI450_07125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ResIII
DEAD
Helicase_C
SWI2_SNF2
zinc_ribbon_2
zf-tcix
AAA_30
DZR
zf-ribbon_3
AAA_16
AAA_22
AAA
MciZ
SLFN-g3_helicase
UPF0547
Motif
Other DBs
NCBI-ProteinID:
UYX08118
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Position
complement(1489302..1491062)
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AA seq
586 aa
AA seq
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MAFTLRPYQREAVSATLNYFRHHTQPAVIVLPTGAGKSLIIAELARLARGRVLVLAHVKE
LVAQNYEKYCAWGLEADIFAAGLQQRESQGKVVFGSVQSVARNLSQFDRAFSLLIIDECH
RISDDENSQYQHIIHHLQKTNPRLRLLGLTATPYRLGKGWIYQYHYHGMVRGDEHCLFRD
CIYELPLRYMIKQGFLVSPNRLDMPVVQYDFSTLAARSNGLFSEADLNHELKRQQRITPQ
IISQIVDYAQTRRGVMIFAATVEHAKEITALLPVGQAALVSADTPVIERDALINAFKQQS
LRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLYPEKTDCLILDYAGNP
HDLYTPEVGNSKPHGDSQPVQVFCPQCGFANLFWGKTASNGEILEHYGRRCQGWEMTENG
QRLQCDFRFRFKVCPHCGAENDIAARRCHQCEEVLVDPDDMLKAALKLKDALVLRCSGMA
FEQGRDAKGEWLTITYHDEDGAEVSERFRLHTSAQRHVFLQQFLRVHQRAPGIPLTWQQA
TDIIAQQALLRAPDFVVARKKGKFWQIREKLFDYQGRFRRANELRG
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atggcattcacgctccgcccataccagcgtgaagcggtttccgccacgctcaattatttt
cgtcaccatactcaaccggctgtcattgttcttccgaccggcgccgggaaaagcctgatc
atcgccgaattggcgcggcttgctcgtggccgtgtactcgtgctggcccacgtcaaagag
ttggttgcgcaaaactacgaaaaatactgcgcctgggggctggaggcggatatcttcgcc
gcaggattacagcagcgagagagtcaggggaaagtggttttcggcagtgtgcagtccgtt
gcacgcaacctcagccagttcgatcgtgccttttcactgctgatcattgatgaatgtcat
cgtattagcgacgatgaaaacagccagtatcaacacatcatccaccacctgcaaaaaacc
aaccctcggttgcgactgctcggtctcactgcgacgccctatcggctggggaaaggttgg
atatatcagtaccactatcacggtatggtacgcggcgatgagcattgtctattccgcgat
tgtatctatgaattgccgctgcgttatatgatcaaacagggttttctggtatcgcccaat
cggcttgatatgcccgtggtacagtatgatttcagcacacttgccgctcgcagcaatggg
cttttcagcgaggcggacctgaatcacgaactcaaacgtcaacagcgtattacgccgcag
attatcagccaaattgtcgactatgcgcaaacccggcgcggcgtaatgatttttgccgca
accgtcgaacatgctaaggaaattaccgccctgctccctgtcggccaggcggcgctagtc
agtgccgatactcctgtaattgaacgcgatgcgctgattaacgccttcaaacagcagtcg
ctgcggtatctggtcaacgtcgccgtgctaaccaccggctttgatgccccccatgtcgat
ctcatcgccattcttcgcccaaccgagtccgtcagtctgtatcagcaaattgttgggcgc
ggtcttcgcttgtatccagaaaaaacagactgcctgatactggattacgcaggcaacccg
cacgatctctatacgcccgaagtcggcaatagcaagccacacggcgatagccagccggta
caagttttttgtcctcaatgcgggtttgccaacctattttggggcaaaaccgcgtcaaac
ggcgaaatcctagaacattatggacgccgctgccaagggtgggaaatgacggaaaacggg
cagcgtctacagtgtgacttccggtttcgtttcaaagtctgcccacactgcggcgcagaa
aatgatatcgcagcccgacgctgtcaccagtgcgaggaagtcttggtcgatcctgatgac
atgctaaaagccgcgctgaagctgaaagatgcgttggttttacgctgtagcggcatggcg
tttgaacaagggcgggatgcgaagggcgaatggctaaccatcacctatcacgacgaggac
ggcgcagaggtcagtgagcgttttcgcctacacacatccgcccagcgccacgtttttctg
caacagtttctccgcgtgcaccaacgggcaccgggaataccgctgacctggcagcaggcc
actgatattatcgcgcagcaggctttattacgtgcccccgactttgtggtagcccgcaaa
aaaggcaaattttggcagatacgtgagaaactgtttgattatcagggtcgctttcgccgc
gcgaatgaactccgcggctaa
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